View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_22 (Length: 267)
Name: NF14916_low_22
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 39056032 - 39055777
Alignment:
| Q |
1 |
acaaaacttaccaatcacattccatcccataacctttcttcaacaaaacttccggagcaatataatctggtgtaccaacggtagaataagcctgtgtcat |
100 |
Q |
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| T |
39056032 |
acaaaacttaccaatcacattccatcccataacctttcttcaacaaaacttccggagcaatataatctggtgtaccaacggtagaataagcctgtgtcat |
39055933 |
T |
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| Q |
101 |
ttatacattcacatttacaaattacaatacactaaaaagagaaactcaattgatcatagagtgtcaatattcataattacatattgtcacagtaattgta |
200 |
Q |
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| T |
39055932 |
ttatacattcacatttacaaattacaatacactaaaaagagaaactcaattgatcatagagtgtcaatattcataattacatattgtcacagtaattgta |
39055833 |
T |
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| Q |
201 |
ataaatataacagtgaccacgacttgatagaaatgatctttcaagtgtccgcctat |
256 |
Q |
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| T |
39055832 |
ataaatataacagtgaccacgacttgatagaaatgaacttacaagtgtcctcctat |
39055777 |
T |
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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 93
Target Start/End: Original strand, 30393305 - 30393395
Alignment:
| Q |
3 |
aaaacttaccaatcacattccatcccataacctttcttcaacaaaacttccggagcaatataatctggtgtaccaacggtagaataagcct |
93 |
Q |
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| T |
30393305 |
aaaactcaccaatcacattccatcccataccctttcttcaaaagaacttctggcgcaatataatccggtgtaccaacagtggaataagcct |
30393395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 15922713 - 15922798
Alignment:
| Q |
9 |
taccaatcacattccatcccataacctttcttcaacaaaacttccggagcaatataatctggtgtaccaacggtagaataagcctg |
94 |
Q |
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| T |
15922713 |
taccaatcacattccatgccatatcctctcttcagaagaacttctggagcaatataatcaggtgttccaaccgtagaatacgcctg |
15922798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 15870129 - 15870214
Alignment:
| Q |
9 |
taccaatcacattccatcccataacctttcttcaacaaaacttccggagcaatataatctggtgtaccaacggtagaataagcctg |
94 |
Q |
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| T |
15870129 |
taccagtcacattccacgccatatcctctcttcagaataacttctggagcaatataatcaggtgttccaaccgtagaataggcctg |
15870214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 33636745 - 33636830
Alignment:
| Q |
9 |
taccaatcacattccatcccataacctttcttcaacaaaacttccggagcaatataatctggtgtaccaacggtagaataagcctg |
94 |
Q |
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| T |
33636745 |
taccaatcacattccaggccatatccttttttcagtagaacttcaggagcaatatagtcaggtgttcctactgtagaataggcctg |
33636830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 48260153 - 48260088
Alignment:
| Q |
5 |
aacttaccaatcacattccatcccataacctttcttcaacaaaacttccggagcaatataatctgg |
70 |
Q |
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| T |
48260153 |
aactaaccaatcacattccatcccatatccttttttcaaaagtacttcaggagcaatgtaatctgg |
48260088 |
T |
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