View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14916_low_23 (Length: 266)
Name: NF14916_low_23
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_23 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 10216711 - 10216944
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
10216711 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgccgaagcaacatcga |
10216810 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10216811 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttcta----agcttccatttttca |
10216906 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10216907 |
tgtaataaaaaactagagctttaaattcttgacctttg |
10216944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 34 - 259
Target Start/End: Original strand, 11048631 - 11048852
Alignment:
| Q |
34 |
agaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttta |
133 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048631 |
agaagaacattacttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttta |
11048730 |
T |
|
| Q |
134 |
acctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaaca |
233 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| | |
|
|
| T |
11048731 |
acctatcaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgtaaccattgttcta----agcttccatttttcatgtaatcaaaaa |
11048826 |
T |
|
| Q |
234 |
ctagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||| ||||||||||||| ||||||| |
|
|
| T |
11048827 |
ctagtgctttaaattcttcacctttg |
11048852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 259
Target Start/End: Complemental strand, 10604981 - 10604766
Alignment:
| Q |
40 |
acattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||| || || | |
|
|
| T |
10604981 |
acattgcttggctttagatcacaatgaatgactaattgctcacattcttgatgaagataatgcaatgcagaagcaacatcaaaaatgatgttaaatcttt |
10604882 |
T |
|
| Q |
140 |
gaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagag |
239 |
Q |
| |
|
|||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
10604881 |
taccaaggtccaacgttgttggaggctctgcatttaaaatctcaggatgcaaccattgttcta----agcttccatttttcatgtaatcaaaaactagag |
10604786 |
T |
|
| Q |
240 |
ctttaaattcttgacctttg |
259 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10604785 |
ctttaaattcttgacctttg |
10604766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 10716902 - 10717135
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||||||| || ||||| ||||||||||| || |||||||||||||||| || ||||||| |
|
|
| T |
10716902 |
atgtcatcatcaagaaggacattgcttggcttaagatcacaatgaatgattaattgttcacattcttggtgaagataatgtaatgcagtggcgacatcga |
10717001 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
10717002 |
tcatgatgtttaatctatgaccaaggtccaatgttcttggatgatctgcatttaaaatctcaagatgcaaccattgttcta----agcttccatttttca |
10717097 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
10717098 |
tgtaatcaaaaactagagctttaaaagtttgacctttg |
10717135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 10740661 - 10740894
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||| | |||||| ||||||||||| || |||||||||||||||| || |||||| |
|
|
| T |
10740661 |
atgtcatcatcaagaaggacattgcttggctttagatcacaatgaaggaccaattgttcacattcttggtgaagataatgtaatgcagtggcgacatcgt |
10740760 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
10740761 |
tcatgatgtttaatctatgaccaaggtccaatgttcttggatgatctgcatttaaaatctcaagatgcaaccattgttcta----agcttccatttttca |
10740856 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||||| ||| || ||||||||||| |||||||||| |
|
|
| T |
10740857 |
tgtaatcaaaaacaagagctttaaaagtttgacctttg |
10740894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 10746977 - 10747210
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||| ||||| | ||||||||||||||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
10746977 |
atgtcatcatcaagaaggacattgcttggcttgagatcacagtgaatgactaattgctcacattcttggtgaagataatgtaatgttgaagcaacatcga |
10747076 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
||||||||||||| || || |||||||| || ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
10747077 |
taatgatgtttaatctgtggccaaggtctaacgtttttggatgctcttcatttaaaaactcaggatgcaaccattgttcta----agcttccatttttta |
10747172 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||||||||| |||||||||||||| || ||| ||||| |
|
|
| T |
10747173 |
tgtaataaaaaactagagctttaaactcctgaactttg |
10747210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 259
Target Start/End: Complemental strand, 10581228 - 10581018
Alignment:
| Q |
44 |
tgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgacc |
143 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
10581228 |
tgcttggctttagatcacaacgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatccataatgatgtttaatctatgacc |
10581129 |
T |
|
| Q |
144 |
aaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagcttt |
243 |
Q |
| |
|
||||| ||||||| || || | |||| | || |||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
10581128 |
aaggttcaatgttgttagaggttctgcactt-aaatctgaggatgcaaccattgttcta----agcttccatttttcatgtaataaaaaactaaagcttt |
10581034 |
T |
|
| Q |
244 |
aaattcttgacctttg |
259 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
10581033 |
aaattcttggcctttg |
10581018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 42 - 259
Target Start/End: Complemental strand, 10565254 - 10565041
Alignment:
| Q |
42 |
attgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatga |
141 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
10565254 |
attgcttggctttagatcacaatgaatgaccaattcttcacattctctatgaagataatgtaatgcagaagcaacatcgataataatgtataatctatga |
10565155 |
T |
|
| Q |
142 |
ccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagct |
241 |
Q |
| |
|
||| |||||||||| |||| | |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| | ||| || |||||| |
|
|
| T |
10565154 |
gcaaagtccaatgttgttgggggttctgcatttaaaatctcaggatgcaaccattgatcta----agcttccatttttcatgtactcaaaaaccagagct |
10565059 |
T |
|
| Q |
242 |
ttaaattcttgacctttg |
259 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10565058 |
ttaaattcttgacctttg |
10565041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 259
Target Start/End: Complemental strand, 10611939 - 10611724
Alignment:
| Q |
40 |
acattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctat |
139 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||||||||||| | ||| |||||||||||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
10611939 |
acattgcttggctttatatcacaatgaaggaccaattgctcacattcattatgaagataatgtaatgcagaaccaacatccataatgatgtttaatctat |
10611840 |
T |
|
| Q |
140 |
gaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagag |
239 |
Q |
| |
|
||| |||||||||||| || ||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||| ||||| | |
|
|
| T |
10611839 |
gactgaggtccaatgttgctgtatgctcttcatttaaaaccttgggatgcaaccattgttcta----agcttccatttttcatgtaatcaaaaactaggg |
10611744 |
T |
|
| Q |
240 |
ctttaaattcttgacctttg |
259 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
10611743 |
ctttaaattcttgacctttg |
10611724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 10763095 - 10763327
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||| | |
|
|
| T |
10763095 |
atgtcatcatcaagaaggacattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatcaa |
10763194 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
||||||| || | || ||| |||| ||||||||| ||||| ||||| ||||||| || ||| |||| |||| |||||| ||||||||||||||| |
|
|
| T |
10763195 |
taatgatattcagtctttgatcaagatccaatgttgttggagtctctgcatttaaattcctagggtgcagccatcgttcta----agcttccatttttca |
10763290 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgaccttt |
258 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
10763291 |
tgtaatcaaaaaccagagctttaaattcttgaccttt |
10763327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 258
Target Start/End: Original strand, 10588404 - 10588624
Alignment:
| Q |
34 |
agaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttta |
133 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||| | || ||||||||||| ||||| |||||||||| ||||||||||| ||||||| |||| |||| |
|
|
| T |
10588404 |
agaaggacgttgcttggctttatatcacaatgaaggaccacctgctcacattcatgatgaagataatgtagtgcagaagcaatatcgatagtgatattta |
10588503 |
T |
|
| Q |
134 |
acctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaaca |
233 |
Q |
| |
|
| |||||| |||||||||| ||| |||||||||||||||| | | || ||||| | ||||||||||| | ||||||||||||||||||| ||| | |
|
|
| T |
10588504 |
atctatgaacaaggtccaacgttcttggatgctctgaattcacattccatggatgaagccattgttcta----aacttccatttttcatgtaatcaaaaa |
10588599 |
T |
|
| Q |
234 |
ctagagctttaaattcttgaccttt |
258 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
10588600 |
ctaaagctttaaattcttgaccttt |
10588624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 259
Target Start/End: Original strand, 19605845 - 19606060
Alignment:
| Q |
40 |
acattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||| ||||| || |||||||||||||||| |||||||| || ||| ||||| || | |
|
|
| T |
19605845 |
acattgcttggctttagatcacaatgaaggaccaattgctcacattcatgatgaaggtaatgtaatgcagaagaaacatcgacaaggatatttaatcttt |
19605944 |
T |
|
| Q |
140 |
gaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagag |
239 |
Q |
| |
|
| ||| | ||||||| ||||||| |||| ||| | || | ||||||||||||||||||| ||||||||||| ||||||| | ||| ||||||| |
|
|
| T |
19605945 |
gctcaaacttcaatgttcttggatgatctgcattcattgtcccgggatgcaaccattgttcta----agcttccatttctcatgtactcaaaaactagag |
19606040 |
T |
|
| Q |
240 |
ctttaaattcttgacctttg |
259 |
Q |
| |
|
|||| |||||| |||||||| |
|
|
| T |
19606041 |
ctttgaattctagacctttg |
19606060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 259
Target Start/End: Complemental strand, 10559131 - 10558916
Alignment:
| Q |
40 |
acattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| || | || | |
|
|
| T |
10559131 |
acattgcttggctttagatcacaatgaaggaccaattgctcacattctcgatgaagataatgtaatgcagaagcaacatcaataatgatattcagtcttt |
10559032 |
T |
|
| Q |
140 |
gaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagag |
239 |
Q |
| |
|
|| ||| ||||||| | |||| |||||| ||| | ||| | ||||||||| | ||||| ||||||||||||||||||| | ||| ||||||| |
|
|
| T |
10559031 |
gattaagatccaatgctcttggttgctctacattcatcatccttgaatgcaaccagttttcta----agcttccatttttcatgtattcaaaaactagag |
10558936 |
T |
|
| Q |
240 |
ctttaaattcttgacctttg |
259 |
Q |
| |
|
|||| ||||| ||||||||| |
|
|
| T |
10558935 |
ctttgaattcctgacctttg |
10558916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 259
Target Start/End: Complemental strand, 7193240 - 7193019
Alignment:
| Q |
34 |
agaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttta |
133 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |||| || ||||||||| || | |||| ||| | | ||| || | |
|
|
| T |
7193240 |
agaaggacattgcttggctttagatcacaatgaatgatcgattgctcacattcaagatgaaggtaatgtaatacaaaggcaatatcaacagcgatattca |
7193141 |
T |
|
| Q |
134 |
acctatgaccaaggtccaatgtttttggatgctctgaattta-aaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaac |
232 |
Q |
| |
|
| || ||| |||||||||| ||| || ||| |||| ||| | |||| |||||| | ||||||||||| ||||||| || |||||||| | ||| |
|
|
| T |
7193140 |
atctttgatcaaggtccaacgttctttgattctctacattcactgatct-aggatgtagccattgttcta----agcttccgttgttcatgtattcaaag |
7193046 |
T |
|
| Q |
233 |
actagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
7193045 |
actaaagctttaaattcttgacctttg |
7193019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 250
Target Start/End: Original strand, 9836311 - 9836514
Alignment:
| Q |
43 |
ttgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgtttaacctatgac |
142 |
Q |
| |
|
||||||||||| | |||||||||||| | || |||||||||||| ||| |||||||||||||||||||||| ||| || ||| |||| || ||| |
|
|
| T |
9836311 |
ttgcttggcttgatatcacaatgaatgaccacttgctcacattcacaatgaagataatgtaatgcagaagcaatatcaatggagatatttagtctttgaa |
9836410 |
T |
|
| Q |
143 |
caaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaacactagagctt |
242 |
Q |
| |
|
|||||| ||||||| | |||| |||||||| | || |||| | ||||||||||| ||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
9836411 |
caaggttcaatgttctaggatactctgaatccactgtccagggataaagccattgttcta----agcttccatttttcatgtaatcaaaaactaaagctt |
9836506 |
T |
|
| Q |
243 |
taaattct |
250 |
Q |
| |
|
|||||||| |
|
|
| T |
9836507 |
taaattct |
9836514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 10652176 - 10652257
Alignment:
| Q |
34 |
agaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaa |
115 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| | | |||||||||||| ||||| || ||||||||| ||||||||| |
|
|
| T |
10652176 |
agaaggacattacttggctttagatcacaatgaatgaccgcttgctcacattcatgatgaaggtaatgtaatacagaagcaa |
10652257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 10660059 - 10660130
Alignment:
| Q |
34 |
agaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaat |
105 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| | | |||||||||||| ||||| || ||||||||| |
|
|
| T |
10660059 |
agaaggacattacttggctttagatcacaatgaatgaccgcttgctcacattcgtgatgaaggtaatgtaat |
10660130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 259
Target Start/End: Complemental strand, 9825261 - 9825114
Alignment:
| Q |
109 |
gaagcaacatcgataatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctag |
208 |
Q |
| |
|
||||||||||| |||||||| || || || ||| |||| ||||||||| | ||||||||| ||| ||| |||| |||||||||||||||||| |
|
|
| T |
9825261 |
gaagcaacatcaataatgatattcaatctttgatcaagatccaatgttctaggatgctctacattctctatccttggattcaaccattgttctaagct-- |
9825164 |
T |
|
| Q |
209 |
cttccatttttcatgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
| ||||||| |||||| | ||| ||||||||||| |||||||| |||||| |
|
|
| T |
9825163 |
-tcccattttgcatgtactcaaaaactagagctttgaattcttgccctttg |
9825114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 7540 - 7307
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||| || ||||||||||||||||||||||||| |
|
|
| T |
7540 |
atgtcatcatcaagaaggacattgcttggctttagatcacaatgaagtattaattgctcacattctcgatgaagttaatgtaatgcagaagcaacatcga |
7441 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
7440 |
tgatgatgtttaatctatgaccaaggttcaatgttattggaggatttgcattcaaagtctcaggatgtaaccactgttcta----agcttccatttttca |
7345 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
7344 |
tgtattcaaaaactagagctttaaattcttgacctttg |
7307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 12899817 - 12899584
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| ||||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
12899817 |
atgtcatcatcaagaaggacattgcttggctttatatcacaatgaaagactaattgctcacattctcgatgaagataatgtaatgcagaagcaacatcga |
12899718 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |||| ||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
12899717 |
tgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattcaaagtctcgggatgtaaccattgttcta----agcttccatttttca |
12899622 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
12899621 |
tgtattcaaaaactagagctttaaattcttgacctttg |
12899584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 12907437 - 12907204
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||| | || || |||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
12907437 |
atgtcatcatcaagaaggacattgcttggttttagatcacaatggaggattaactgctcacattctcgatgaagataatgtaatgcagaagcaacatcga |
12907338 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
| ||||||||||| ||| ||||||||| ||||||| ||||| | | || ||| ||| | |||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
12907337 |
tgatgatgtttaatctaagaccaaggttcaatgttgttggaggatttgcattcaaagtttcaggatgtaaccactgttcta----agcttccatttttca |
12907242 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
12907241 |
tgtattcaaaaactagagctttaaattcttgacctttg |
12907204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 12932526 - 12932293
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||||| || || |||||||||||| |||| || ||||| ||||||||||||||||||| |
|
|
| T |
12932526 |
atgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcga |
12932427 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
12932426 |
tgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattcaaagtctcaggatgtaaccactgttcta----agcttccatttttca |
12932331 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||| | ||| ||||| ||||||||||||||||||||| |
|
|
| T |
12932330 |
tgtattcaaaaactagtgctttaaattcttgacctttg |
12932293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 259
Target Start/End: Complemental strand, 12948891 - 12948658
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||||||||| | |||| |||||||||||||||||||||||||||| |
|
|
| T |
12948891 |
atgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggactaattgctcacattatcgatgaagataatgtaatgcagaagcaacatcga |
12948792 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
||||||||||||| ||| ||| ||||| ||||||| ||||| | | || ||| ||| |||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
12948791 |
taatgatgtttaatctacgacgaaggttcaatgttgttggaggatttgcattcaaagtctcaggatgtaaccactgttcta----agcttccatttttca |
12948696 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||| | ||| |||||||||||||||||||| |||||| |
|
|
| T |
12948695 |
tgtattcaaaaactagagctttaaattcttggcctttg |
12948658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 259
Target Start/End: Complemental strand, 12958313 - 12958092
Alignment:
| Q |
34 |
agaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttta |
133 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| || || |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12958313 |
agaaggacattgcttggctttagatcacagtgaaggattaactgctcacattctcgatgaagataatgtaatgcagaagcaacatcgatgatgatgttta |
12958214 |
T |
|
| Q |
134 |
acctatgaccaaggtccaatgtttttggatg-ctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttcatgtaataaaac |
232 |
Q |
| |
|
| ||||||||||||| ||||||| ||||| | ||| | ||| ||||| | |||||| ||||| ||||||| |||||||||||| |||||| | ||| |
|
|
| T |
12958213 |
atctatgaccaaggttcaatgttgttggaggactc-gcattcaaaatttgaggatgtaaccactgttcta----agcttccattttccatgtattcaaaa |
12958119 |
T |
|
| Q |
233 |
actagagctttaaattcttgacctttg |
259 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
12958118 |
actagagctttaaattcttgacctttg |
12958092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 22 - 259
Target Start/End: Original strand, 17923365 - 17923598
Alignment:
| Q |
22 |
atgtcatcattcagaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcga |
121 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||||| || || |||||||||||| |||| || ||||| ||||||||||||||||||| |
|
|
| T |
17923365 |
atgtcatcatcaagaaggacattgcttggttttagatcacaatgaaggattaactgctcacattctcgatgaaggtaatgcaatgcagaagcaacatcga |
17923464 |
T |
|
| Q |
122 |
taatgatgtttaacctatgaccaaggtccaatgtttttggatgctctgaatttaaaatctcaggatgcaaccattgttctaagctagcttccatttttca |
221 |
Q |
| |
|
| ||||||||||| ||||||||||||| ||||||| ||||| | | || ||| ||| |||||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
17923465 |
tgatgatgtttaatctatgaccaaggttcaatgttgttggaggatttgcattcaaagtctcaggatgtaaccactgttcta----agcttccatttttca |
17923560 |
T |
|
| Q |
222 |
tgtaataaaacactagagctttaaattcttgacctttg |
259 |
Q |
| |
|
|||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
17923561 |
tgtattcaaaaactagagctttaaattcttgacctttg |
17923598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 31467136 - 31467239
Alignment:
| Q |
34 |
agaagaacattgcttggctttagatcacaatgaataatcaattgctcacattcttgatgcagataatgtaatgcagaagcaacatcgataatgatgttta |
133 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||||||| | ||||| |||||| ||||| |||||||| ||||| |||||||| || ||||| || |||| |
|
|
| T |
31467136 |
agaagaacgttgctaggctttaaatcacaatgaatgacaggttgctgacattcatgatgaagataatgaaatgccgaagcaacgtcaataataatattta |
31467235 |
T |
|
| Q |
134 |
acct |
137 |
Q |
| |
|
|||| |
|
|
| T |
31467236 |
acct |
31467239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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