View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14916_low_25 (Length: 255)

Name: NF14916_low_25
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14916_low_25
NF14916_low_25
[»] chr5 (4 HSPs)
chr5 (1-176)||(3154828-3155003)
chr5 (177-245)||(13660861-13660930)
chr5 (168-204)||(7734824-7734860)
chr5 (170-202)||(32147563-32147595)
[»] chr7 (1 HSPs)
chr7 (170-238)||(6387318-6387387)
[»] chr4 (3 HSPs)
chr4 (171-208)||(39144670-39144707)
chr4 (177-245)||(50352064-50352133)
chr4 (177-245)||(55632227-55632296)
[»] chr3 (2 HSPs)
chr3 (177-248)||(33361658-33361729)
chr3 (177-213)||(16435236-16435273)
[»] chr8 (5 HSPs)
chr8 (176-245)||(34490516-34490586)
chr8 (173-238)||(43654178-43654244)
chr8 (177-238)||(12255096-12255157)
chr8 (177-238)||(12260639-12260700)
chr8 (177-213)||(38183566-38183602)
[»] chr2 (2 HSPs)
chr2 (176-208)||(8990203-8990235)
chr2 (177-213)||(10757979-10758015)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 3154828 - 3155003
Alignment:
Q  1 cgagagtgtcccgaatgacatgtacatgacgtgtaaaagagatttttcacaaacaatccattctttcccaaatcaaaacaccattaccgcgttttagtaa 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3154828 cgagagtatcccgaatgacatgtacatgacgtgtaaaagagatttttcacaaacaatccattctttcccaaatcaaaacaccatcaccgcgttttagtaa 3154927  T
Q  101 atttccctcagatttatgattagaaatgaggtctcaatggaatctatacaatggtactccattcacaaataaaaga 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3154928 atttccctcagatttatgattagaaatgaggtctcaatggaatctatacaatggtactccattcacaaataaaaga 3155003  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 13660861 - 13660930
Alignment:
Q  177 tactccctccgtctctaattataagat-cttttgagaannnnnnnngtccctttttataagactcctttg 245  Q
    ||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||| ||||||    
T  13660861 tactccctccgtctctaattataagatccttttgagaattttttttgtccctttttataagacccctttg 13660930  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 7734824 - 7734860
Alignment:
Q  168 aataaaagatactccctccgtctctaattataagatc 204  Q
    |||||| |||||| |||||||||||||||||||||||    
T  7734824 aataaatgatactacctccgtctctaattataagatc 7734860  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 32147595 - 32147563
Alignment:
Q  170 taaaagatactccctccgtctctaattataaga 202  Q
    ||||| |||||||||||||||||||||||||||    
T  32147595 taaaaaatactccctccgtctctaattataaga 32147563  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 6387318 - 6387387
Alignment:
Q  170 taaaagatactccctccgtctctaattataaga-tcttttgagaannnnnnnngtccctttttataagac 238  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||        |||||||||||||||||    
T  6387318 taaaaaatactccctccgtctctaattataagactcttttgagaattttttttgtccctttttataagac 6387387  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 39144707 - 39144670
Alignment:
Q  171 aaaagatactccctccgtctctaattataagatctttt 208  Q
    |||||||||||||||||||||||||||||||| |||||    
T  39144707 aaaagatactccctccgtctctaattataagacctttt 39144670  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 50352064 - 50352133
Alignment:
Q  177 tactccctccgtctctaattataagat-cttttgagaannnnnnnngtccctttttataagactcctttg 245  Q
    ||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||| ||||||    
T  50352064 tactccctccgtctctaattataagatccttttgagaattttttttgtccctttttataagacccctttg 50352133  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 55632296 - 55632227
Alignment:
Q  177 tactccctccgtctctaattataagat-cttttgagaannnnnnnngtccctttttataagactcctttg 245  Q
    ||||||||||||||||||||||||||| ||||||||||        ||||||||||||||||| ||||||    
T  55632296 tactccctccgtctctaattataagatccttttgagaattttttttgtccctttttataagacccctttg 55632227  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 33361729 - 33361658
Alignment:
Q  177 tactccctccgtctctaattataagatcttttgagaannnnnnnngtccctttttataagactcctttgctt 248  Q
    |||| ||||||||||||||||||||| ||||||||||        |||||||||||||||||  ||||||||    
T  33361729 tactacctccgtctctaattataagaacttttgagaattttttttgtccctttttataagacctctttgctt 33361658  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 16435273 - 16435236
Alignment:
Q  177 tactccctccgtctctaattataagat-cttttgagaa 213  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  16435273 tactccctccgtctctaattataagatccttttgagaa 16435236  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 34490516 - 34490586
Alignment:
Q  176 atactccctccgtctctaattataagatc-ttttgagaannnnnnnngtccctttttataagactcctttg 245  Q
    |||||||||||||| |||||||||||||| |||||||||        ||||||||||||||||| ||||||    
T  34490516 atactccctccgtccctaattataagatctttttgagaattttttttgtccctttttataagacccctttg 34490586  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 43654244 - 43654178
Alignment:
Q  173 aagatactccctccgtctctaattataaga-tcttttgagaannnnnnnngtccctttttataagac 238  Q
    ||||||||||||||||| |||||||||||| |||||||||||        |||||||||||||||||    
T  43654244 aagatactccctccgtccctaattataagactcttttgagaattttttttgtccctttttataagac 43654178  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 12255096 - 12255157
Alignment:
Q  177 tactccctccgtctctaattataagatcttttgagaannnnnnnngtccctttttataagac 238  Q
    ||||||||||||| |||||||||||||| ||||||||        |||||||||||||||||    
T  12255096 tactccctccgtccctaattataagatcctttgagaattttttttgtccctttttataagac 12255157  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 12260639 - 12260700
Alignment:
Q  177 tactccctccgtctctaattataagatcttttgagaannnnnnnngtccctttttataagac 238  Q
    ||||||||||||| |||||||||||||| ||||||||        |||||||||||||||||    
T  12260639 tactccctccgtccctaattataagatcctttgagaattttttttgtccctttttataagac 12260700  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 38183602 - 38183566
Alignment:
Q  177 tactccctccgtctctaattataagatcttttgagaa 213  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  38183602 tactccctccgtccctaattataagaccttttgagaa 38183566  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 8990203 - 8990235
Alignment:
Q  176 atactccctccgtctctaattataagatctttt 208  Q
    |||||||||||||| ||||||||||||||||||    
T  8990203 atactccctccgtccctaattataagatctttt 8990235  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 10758015 - 10757979
Alignment:
Q  177 tactccctccgtctctaattataagatcttttgagaa 213  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  10758015 tactccctccgtccctaattataagaccttttgagaa 10757979  T

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