View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14916_low_29 (Length: 239)
Name: NF14916_low_29
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2466943 - 2467164
Alignment:
| Q |
1 |
ccataacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccactgtattatctttagatctttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2466943 |
ccataacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccactgtattatctttagatctttct |
2467042 |
T |
|
| Q |
101 |
gttgttaacaaagtaagaataataatggcagctttatgtatacaatgacaacaactggaatatcacaagctccttgatgcaaacatattctaataacaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2467043 |
gttgttaacaaagtaagaataataatggcagcttcatgtatacaatgacaacaactggaatatcacaagctccttgatgcaaacatattctaataacaag |
2467142 |
T |
|
| Q |
201 |
aacattcaaaataaaatagaac |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2467143 |
aacattcaaaataaaatagaac |
2467164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 20011799 - 20011914
Alignment:
| Q |
4 |
taacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccactgtattatctttagatctttctgtt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20011799 |
taacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccactgtattatctctagatctttctgtt |
20011898 |
T |
|
| Q |
104 |
gttaacaaagtaagaa |
119 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20011899 |
gttaacaaagtaagaa |
20011914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 43692743 - 43692815
Alignment:
| Q |
46 |
taaccgatgaaagtaataactatctcttgccactgtattatctttagatctttctgttgttaacaaagtaaga |
118 |
Q |
| |
|
||||| ||||||||| || |||| ||| ||| || ||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
43692743 |
taaccaatgaaagtagtagctatatctggccgttgaattttctttagagctttctattgttaacaaagtaaga |
43692815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 22621914 - 22622029
Alignment:
| Q |
4 |
taacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccactgtattatctttagatctttctgtt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621914 |
taacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccactgtattatctttagatctttctgtt |
22622013 |
T |
|
| Q |
104 |
gttaacaaagtaagaa |
119 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22622014 |
gttaacaaagtaagaa |
22622029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 25548733 - 25548622
Alignment:
| Q |
4 |
taacaagacacaaacatcaaccagaagtaaaaacaaatggagtaaccgatgaaagtaataactatctcttgccactgtattatctttagatctttctgtt |
103 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25548733 |
taacaagacacaaacatcaaccagaa----aaacaaatggagtaaccgatgaaagtaataactatctcttgccactgtattatctttagatctttttgtt |
25548638 |
T |
|
| Q |
104 |
gttaacaaagtaagaa |
119 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25548637 |
gttaacaaagtaagaa |
25548622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 15157423 - 15157506
Alignment:
| Q |
36 |
acaaatggagtaaccgatgaaagtaataactatctcttgccactgtattatctttagatctttctgttgttaacaaagtaagaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15157423 |
acaaatggagtaaccgatgaaagtaataactatctcttgccgctgtattaactttagatctttctgttgttaacaaagtaagaa |
15157506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University