View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_3 (Length: 567)
Name: NF14916_low_3
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 48 - 562
Target Start/End: Original strand, 5159249 - 5159757
Alignment:
| Q |
48 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaattt |
147 |
Q |
| |
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||||| |||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159249 |
cattttctctttgacgcgataggttgccaacttcaatgagtaaatgccatctttatcatattcccataccaatttgtcatctaggattctccaagaattt |
5159348 |
T |
|
| Q |
148 |
gagacttcatcttcttgttttgtcatatgcactcnnnnnnn-cttgaaattttttaaatagtcaaacataatttgtaaannnnnnn-ggggaatagttct |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5159349 |
gagacttcatcttcttgttttgtcatatgcactcaaaaaaaacttgaaattttttaaatagtcaaacataatttgtaaattttttttggggaatagttct |
5159448 |
T |
|
| Q |
246 |
tacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn-ctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaag |
344 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159449 |
tacagatttatttattgaaa-ttatatctctaactatgtactctctttttttttctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaag |
5159547 |
T |
|
| Q |
345 |
ctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttggggatggattgtt |
444 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5159548 |
ctataatcaaatgaacggctcaattgaaggtatgaatactaccaaacacaaataattaattcataactgcttcac------------gggatggattgtt |
5159635 |
T |
|
| Q |
445 |
acaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattgacgccattggaaaaact |
540 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
5159636 |
acaatgaagataacttttttattgattttaaattttaaataattaacaaaaacaatgaaataagttaattaatgtatatattgacgccattggaaaaact |
5159735 |
T |
|
| Q |
541 |
ttaagatttttatgatgatgtc |
562 |
Q |
| |
|
|||||||||||||||| ||||| |
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|
| T |
5159736 |
ttaagatttttatgataatgtc |
5159757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 233 - 562
Target Start/End: Original strand, 5195065 - 5195403
Alignment:
| Q |
233 |
ggggaatagttcttacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn----ctgcagatgttcaacatttgaaaaacttga |
328 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
5195065 |
ggggaatagttcttaccgatttatttattgaaaattatatctctaactatgtactctctttttttttcttctgcagatgttcaacatttgaaaaatttga |
5195164 |
T |
|
| Q |
329 |
aaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggtt |
428 |
Q |
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||||||||| ||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5195165 |
aaatgttaagtttaaacgataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggtt |
5195264 |
T |
|
| Q |
429 |
ttggggatggattgttacaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattga |
524 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||| || ||||||||||||| |
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| T |
5195265 |
ttggggatcgattgttacaatgaagataacttttttttttattttaaattttaaataattaacaaaaacaacgaaataagttaattaatgtatatattga |
5195364 |
T |
|
| Q |
525 |
cgccattggaaaaac-tttaagatttttatgatgatgtc |
562 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
5195365 |
cgccattggaaaaacttttaagatttttatgataatgtc |
5195403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 272 - 562
Target Start/End: Original strand, 5181710 - 5182005
Alignment:
| Q |
272 |
tctctaactatgtactctcnnnnnnnnctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattca |
371 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |
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|
| T |
5181710 |
tctctaactatgtactctctttttttcctgcagatgttcaacatttgaaaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattga |
5181809 |
T |
|
| Q |
372 |
aggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttggggatggattgttacaatgaagataacttttttattgatt |
471 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5181810 |
aggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggttttggggatggattgttacaatgaagataacttttatattgatt |
5181909 |
T |
|
| Q |
472 |
ttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattgacgccattggaaaaac-tttaagatttttatgatgatgtc |
562 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
5181910 |
ttaaattttaaataattaacaaaaagaatgaaataagttaattaatgtatatattgacgccattggaaaaacttttaagatttttatgataatgtc |
5182005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 5181476 - 5181608
Alignment:
| Q |
47 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaatt |
146 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
5181476 |
ccatttcctctttgacgcgataggttgccgacttcaatgagtaaatgccatctttatcatattcccataccaatttctcatctaggattctccaagaatt |
5181575 |
T |
|
| Q |
147 |
tgagacttcatcttcttgttttgtcatatgcac |
179 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
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|
| T |
5181576 |
tgagatttcatcttcttgttttgtcatatgcac |
5181608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 300 - 405
Target Start/End: Original strand, 5172489 - 5172594
Alignment:
| Q |
300 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataa |
399 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |
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|
| T |
5172489 |
tgcagatgttcaacacttgaaaaaattgaaaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataaataa |
5172588 |
T |
|
| Q |
400 |
ttaatt |
405 |
Q |
| |
|
|||||| |
|
|
| T |
5172589 |
ttaatt |
5172594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 4843133 - 4843028
Alignment:
| Q |
300 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||||| |||||| |||||| |
|
|
| T |
4843133 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtatcaatactatcaaacataaataa |
4843034 |
T |
|
| Q |
400 |
ttaatt |
405 |
Q |
| |
|
|||||| |
|
|
| T |
4843033 |
ttaatt |
4843028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 301 - 400
Target Start/End: Original strand, 5212716 - 5212815
Alignment:
| Q |
301 |
gcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataat |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| |||| || | |||||||||||||||||| || ||||||| |||| ||||||||||||||||| |
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|
| T |
5212716 |
gcagatgttcaacatttgagaaacttgaaaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat |
5212815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 5194831 - 5194882
Alignment:
| Q |
47 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5194831 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgccatc |
5194882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 4843339 - 4843278
Alignment:
| Q |
48 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatatt |
109 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |
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|
| T |
4843339 |
cattttctctttgacgcgatagtttgccgacttcaatgagtaaatgccatctttatcatatt |
4843278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 487 - 561
Target Start/End: Complemental strand, 4842927 - 4842849
Alignment:
| Q |
487 |
ttaacaaaaacaatgaaataagt----tgatgtatatattgacgccattggaaaaactttaagatttttatgatgatgt |
561 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
4842927 |
ttaacaaaaacaatgaaataagtaaattaatttatatattgagtccattggaaaaactttaagatttttatgataatgt |
4842849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 515 - 562
Target Start/End: Original strand, 5172630 - 5172677
Alignment:
| Q |
515 |
tatatattgacgccattggaaaaactttaagatttttatgatgatgtc |
562 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5172630 |
tatatattgagtccattggaaaaactttaagatttttatgataatgtc |
5172677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 5172339 - 5172374
Alignment:
| Q |
113 |
ataccaatttgtcatctaggattctccaagaatttg |
148 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5172339 |
ataccaatttgtcatcaaggattctccaagaatttg |
5172374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 289
Target Start/End: Complemental strand, 4843183 - 4843149
Alignment:
| Q |
255 |
atttattgaaaattatatctctaactatgtactct |
289 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
4843183 |
atttattgaatattatatctctaactatgtactct |
4843149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 4843461 - 4843423
Alignment:
| Q |
8 |
gaaaaaatatgttttgtcactctccacataatactcttt |
46 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
4843461 |
gaaaaaatatggtttgccactctccacataatactcttt |
4843423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 5172102 - 5172136
Alignment:
| Q |
12 |
aaatatgttttgtcactctccacataatactcttt |
46 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
5172102 |
aaatatgttttgccactctccacataatactcttt |
5172136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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