View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_31 (Length: 233)
Name: NF14916_low_31
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 52823856 - 52824046
Alignment:
| Q |
17 |
ctcccaaccatttccctctctgcgatatttgcctcgtaattctctccaatatttatgcatactaaacttgttatatatagaaagagactatatagtatta |
116 |
Q |
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| T |
52823856 |
ctcccaaccatttccctctctgcgatatttgcctcgtaattctctccaatatttatgtatactaatcttgttatatatagaaagagactatatagtatta |
52823955 |
T |
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| Q |
117 |
atttcatttaactatatcaactcatgaatttattataataatgatacattggatttgtttctttgtttgtaggaaagaagaggttttgttt |
207 |
Q |
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| T |
52823956 |
atttcatttaactatatcaactcatgaatttattataataatgatacattggatttgtttctttgtttgtaggaaagaagaggttttgttt |
52824046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 34012406 - 34012374
Alignment:
| Q |
200 |
ttttgtttatgagtaatgatacatagacaccct |
232 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
34012406 |
ttttttttatgagtaatgatacatagacaccct |
34012374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 33149748 - 33149716
Alignment:
| Q |
200 |
ttttgtttatgagtaatgatacatagacaccct |
232 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
33149748 |
ttttttttatgagtaatgatacatagacaccct |
33149716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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