View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14916_low_32 (Length: 228)

Name: NF14916_low_32
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14916_low_32
NF14916_low_32
[»] chr3 (8 HSPs)
chr3 (7-210)||(49445287-49445490)
chr3 (104-166)||(49426476-49426538)
chr3 (106-160)||(49416040-49416094)
chr3 (103-153)||(43362339-43362389)
chr3 (123-165)||(49437825-49437867)
chr3 (104-165)||(49432718-49432779)
chr3 (13-73)||(8312219-8312279)
chr3 (13-81)||(8316675-8316743)
[»] chr7 (5 HSPs)
chr7 (124-165)||(12635966-12636007)
chr7 (103-164)||(1333159-1333220)
chr7 (118-166)||(11378461-11378509)
chr7 (104-166)||(32247164-32247226)
chr7 (118-166)||(11375285-11375333)
[»] chr2 (3 HSPs)
chr2 (14-81)||(1019176-1019243)
chr2 (13-74)||(989595-989656)
chr2 (13-73)||(1024755-1024815)
[»] chr1 (2 HSPs)
chr1 (15-165)||(41662531-41662681)
chr1 (104-165)||(1965595-1965656)
[»] scaffold0244 (1 HSPs)
scaffold0244 (104-160)||(5720-5776)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 49445490 - 49445287
Alignment:
Q  7 gatgtccaagaatattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactcttttgaggttcaaaggcctgcatggtg 106  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445490 gatgtccaggaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactcttttgaggttcaaaggcctgcatggtg 49445391  T
Q  107 agcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatcactggaccttcgccttgtgattatcttcttcctcccgggcc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445390 agcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatcactggaccttcgccttgtgattatcttcttcctcccgggcc 49445291  T
Q  207 catg 210  Q
    ||||    
T  49445290 catg 49445287  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 49426538 - 49426476
Alignment:
Q  104 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 166  Q
    ||||||||||  |||||||| ||||| | |||||||||||||||||||||||||||| |||||    
T  49426538 gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatca 49426476  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 49416040 - 49416094
Alignment:
Q  106 gagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 160  Q
    ||||||||  |||||| ||| |||||||||||||| |||||||||||||||||||    
T  49416040 gagcttctattggcaagatacattttgaagaatgctagagttttgcaaaccatga 49416094  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 43362339 - 43362389
Alignment:
Q  103 ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaa 153  Q
    ||||||||| |  |||||| ||||||| |||||||||||||||||||||||    
T  43362339 ggtgagcttttattggcaatatatattgtgaagaatgcaagagttttgcaa 43362389  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 49437867 - 49437825
Alignment:
Q  123 atatattttgaagaatgcaagagttttgcaaaccatgacaatc 165  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||    
T  49437867 atatattctgaagaatgcaagagttttgcaaacaatgtcaatc 49437825  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 49432779 - 49432718
Alignment:
Q  104 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatc 165  Q
    ||||||||||  |||||| ||||||| | |||||| ||||||||||| ||||||||| ||||    
T  49432779 gtgagcttctattggcaagatatattctaaagaattcaagagttttgtaaaccatgaaaatc 49432718  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 8312219 - 8312279
Alignment:
Q  13 caagaatattgggttgacccagagtttgttccacactgcatttcattaaaccttagaactt 73  Q
    |||||| ||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||    
T  8312219 caagaaaattgggtggacccagaatttgttccacaatgccttttatcacaccttagaactt 8312279  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 8316675 - 8316743
Alignment:
Q  13 caagaatattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactctt 81  Q
    |||||| ||||||| || ||||| ||||||||||| ||| ||| || | ||||||||||||| ||||||    
T  8316675 caagaaaattgggtggaaccagaatttgttccacaatgccttttatcacaccttagaacttgcactctt 8316743  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 12635966 - 12636007
Alignment:
Q  124 tatattttgaagaatgcaagagttttgcaaaccatgacaatc 165  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  12635966 tatattttgaagaatgcaagagttttacaaaccatgacaatc 12636007  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 1333220 - 1333159
Alignment:
Q  103 ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaat 164  Q
    |||||||||||| | ||||  ||||| ||||||||||| |||||||| ||||||||||||||    
T  1333220 ggtgagcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaat 1333159  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 11378461 - 11378509
Alignment:
Q  118 gcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 166  Q
    ||||||||||||||||||||||||| ||| ||||| || ||||||||||    
T  11378461 gcaaaatatattttgaagaatgcaaaagtattgcagacaatgacaatca 11378509  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 32247164 - 32247226
Alignment:
Q  104 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 166  Q
    |||||||| || | ||||||||||||||||||||||||||| | || |||| ||||| |||||    
T  32247164 gtgagcttatgttagcaaaatatattttgaagaatgcaagaatgttacaaatcatgaaaatca 32247226  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 11375285 - 11375333
Alignment:
Q  118 gcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 166  Q
    ||||| ||||||||||||||||||| ||| ||||| | |||||||||||    
T  11375285 gcaaagtatattttgaagaatgcaaaagtattgcagatcatgacaatca 11375333  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 1019243 - 1019176
Alignment:
Q  14 aagaatattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactctt 81  Q
    ||||| ||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||| ||||||    
T  1019243 aagaaaattgggtggacccagaatttgttccacaatgccttttatcacaccttagaacttgcactctt 1019176  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 989656 - 989595
Alignment:
Q  13 caagaatattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttg 74  Q
    |||||| ||||||| || ||||| ||||||||||| ||| |||||| | |||||||||||||    
T  989656 caagaaaattgggtggaaccagaatttgttccacaatgcctttcatcataccttagaacttg 989595  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 1024815 - 1024755
Alignment:
Q  13 caagaatattgggttgacccagagtttgttccacactgcatttcattaaaccttagaactt 73  Q
    |||||| ||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||    
T  1024815 caagaaaattgggtggacccagaatttgttccacaatgctttttatcacaccttagaactt 1024755  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 41662681 - 41662531
Alignment:
Q  15 agaatattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactcttttgaggttcaaaggcctgcatggtgagcttctg 114  Q
    |||| ||||||| ||| ||||  |||||||| | ||  |||||||| ||||||||||||| | |||||| | |||    ||||| || |  |||||| ||    
T  41662681 agaagattgggtagactcagatgttgttccagaatgtctttcattacaccttagaacttgcaatcttttcaagttatcgggcctacaagacgagcttatg 41662582  T
Q  115 atggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatc 165  Q
     | ||||  ||| |||||||||||||||||||||| |||||||||| ||||    
T  41662581 ctagcaaggtatgttttgaagaatgcaagagttttacaaaccatgaaaatc 41662531  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 1965595 - 1965656
Alignment:
Q  104 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatc 165  Q
    ||||||||||  |||||| ||||||| | |||||| ||| ||||||||||||||||| ||||    
T  1965595 gtgagcttcttttggcaagatatattctaaagaatacaaaagttttgcaaaccatgaaaatc 1965656  T

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Target: scaffold0244 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 5776 - 5720
Alignment:
Q  104 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 160  Q
    ||||||||| | | ||||||||||||||||||||| ||||| ||||  |||||||||    
T  5776 gtgagcttcagttagcaaaatatattttgaagaattcaagaattttagaaaccatga 5720  T

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