View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14916_low_35 (Length: 207)

Name: NF14916_low_35
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14916_low_35
NF14916_low_35
[»] chr6 (13 HSPs)
chr6 (1-207)||(23283518-23283724)
chr6 (1-206)||(23289832-23290037)
chr6 (1-168)||(23251908-23252075)
chr6 (1-168)||(23257884-23258051)
chr6 (1-168)||(23266439-23266606)
chr6 (1-168)||(23247496-23247663)
chr6 (1-207)||(23391300-23391506)
chr6 (1-147)||(23587047-23587193)
chr6 (1-172)||(23634056-23634227)
chr6 (1-147)||(23583164-23583309)
chr6 (1-172)||(23594088-23594259)
chr6 (1-171)||(23506877-23507047)
chr6 (105-172)||(23506714-23506781)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 23283724 - 23283518
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23283724 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 23283625  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaaggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23283624 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaaggg 23283525  T
Q  201 cagctgc 207  Q
    |||||||    
T  23283524 cagctgc 23283518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 23290037 - 23289832
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    ||||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||| |||| || ||||||||||| || |||||||||||||||    
T  23290037 taaatgggtgtgtgaaatgagggaaccaaataagaagactaggatttggctagggacttttgcaacagccgagatggctgcccgtgcacacgacgttgca 23289938  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaaggg 200  Q
    || || ||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23289937 gcaattgcattgaggggccgctacgcctgtctcaactttgcagactcggcgtggaagcttcctattcctgcctccgctgaagcaaaagacattcaaaggg 23289838  T
Q  201 cagctg 206  Q
    ||||||    
T  23289837 cagctg 23289832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 23252075 - 23251908
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    |||||||||||||||||||||||| || |||| ||||| ||||||||||||||| ||||||||||| || |||||||| || ||||| ||||| |||||     
T  23252075 taaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctaggaacttttccaacagccgagatggcagcccgagcccacgatgttgcc 23251976  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcc 168  Q
    || || ||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||    
T  23251975 gcgatagcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattcc 23251908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 23258051 - 23257884
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||  | || ||||| || ||||| ||||| |||||     
T  23258051 taaatgggtgtgtgaaatgagggaacccaacacaaagaccaggatttggctggggacttttccaacacccgaaatggcagcccgagcccacgatgttgcc 23257952  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcc 168  Q
    || |||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||    
T  23257951 gcaatggcattgaggggccgctatgcctgtctcaattttgcagactcggtgtggcgccttcctattcc 23257884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 23266606 - 23266439
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||||||||| ||||||||||| || |||||||| || ||||| ||||| |||||     
T  23266606 taaatgggtttgtgaaatgagggaacccaacacgaagactagaatttggctaggaacttttccaacagccgagatggcagcccgagcccacgatgttgct 23266507  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcc 168  Q
    || |||||||| ||||| ||||| ||||||||||| |||||||| ||||||||| |||||||||||||    
T  23266506 gcgatggcattgaggggtcgctacgcctgtctcaattttgcagattcggtgtggcggcttcctattcc 23266439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 23247663 - 23247496
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    |||||||||||||||||||||||| || |||| ||||| |||||||||||| || |||||||||||  | ||||||||||| ||||| ||||| |||||     
T  23247663 taaatgggtttgtgaaatgagggagccgaacacaaagaataggatttggctgggaacttttccaacaccggagatggctgcccgagcccacgatgttgct 23247564  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcc 168  Q
    || |||||||| ||||||||||||||||||||||| ||  |||||||||||||| | |||||||||||    
T  23247563 gcaatggcattgaggggccgctatgcctgtctcaatttctcagactcggtgtggcgccttcctattcc 23247496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 23391506 - 23391300
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    ||||||||| ||||||||||||||||| || || |||||||  ||||||||||| ||||||||||| || |||||||| || |||||||| || |||||     
T  23391506 taaatgggtgtgtgaaatgagggaaccaaataagaagactaaaatttggctaggcacttttccaactgcggagatggcagcccgagcacatgatgttgcc 23391407  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcctccgctgaagcaaaagacattcaaaggg 200  Q
    || |||||||| ||||||||||| ||||||||||||||||||||||| | |||| |||| ||||| |||||| || || | |||||||| || |||| ||    
T  23391406 gcaatggcattgaggggccgctacgcctgtctcaactttgcagactccgcgtggcggctccctatacctgccaccactcaggcaaaagatatacaaaagg 23391307  T
Q  201 cagctgc 207  Q
    | |||||    
T  23391306 cggctgc 23391300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 23587193 - 23587047
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    |||||||||||||||||||||||| || ||||| ||||||| |||||||||||||||||||||||| || |||||||| || || || ||||| |||||     
T  23587193 taaatgggtttgtgaaatgagggagcctaacaagaagactaagatttggctagggacttttccaactgccgagatggcagcccgtgcccacgatgttgct 23587094  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactc 147  Q
    || |||||||| ||||||||||| || ||||||||||||||||||||    
T  23587093 gcaatggcattgaggggccgctacgcttgtctcaactttgcagactc 23587047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 23634227 - 23634056
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    ||||||||| |||||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| || || ||     
T  23634227 taaatgggtgtgtgaaatgagggagcctaacaagaagactaagatttggctagggacttttccaacggccgagatggcagcacgagcacatgatgtcgcg 23634128  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcc 172  Q
    ||  |||||||||| || ||| | |||||||| || ||||| ||||| |  | | |||||||||||||||||    
T  23634127 gcattggcattaagaggtcgcaacgcctgtcttaattttgctgactctgcctcgcggcttcctattcctgcc 23634056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 23583309 - 23583164
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    |||||||||||||||||||||| | || ||||| ||||||| |||||||||||||||||||||||| || ||||||||  | || || ||||| |||||     
T  23583309 taaatgggtttgtgaaatgaggaagcctaacaagaagactaagatttggctagggacttttccaactgcggagatggcaacccgtgcccacgatgttgct 23583210  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactc 147  Q
    || |||||||| | ||||||||| |||||||||||||||||||||||    
T  23583209 gcaatggcattga-gggccgctacgcctgtctcaactttgcagactc 23583164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 23594259 - 23594088
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    ||||||||| |||||||||||||| || ||||| | ||||| ||| |||||||| |||||||||| |||||||||||  |||||||| || || || ||     
T  23594259 taaatgggtgtgtgaaatgagggagcctaacaagatgactaagatatggctaggaacttttccaatggctgagatggaagcacgagcccatgatgtcgcg 23594160  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcc 172  Q
     |  ||||||| || ||  | || || |||||||||||||||||||| |  ||| |||| | ||||||||||    
T  23594159 acattggcattgagaggttgttacgcttgtctcaactttgcagactctgcatggcggctccttattcctgcc 23594088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 23507047 - 23506877
Alignment:
Q  1 taaatgggtttgtgaaatgagggaacccaacaaaaagactaggatttggctagggacttttccaacggctgagatggctgcacgagcacacgacgttgca 100  Q
    ||||||||| |||||||| ||  | || ||||||||||| | |||||||||||| ||||||||||| || |||||||| || || || || || |||||     
T  23507047 taaatgggtgtgtgaaataagacagcctaacaaaaagaccaagatttggctaggaacttttccaacagccgagatggcagctcgggcccatgatgttgcg 23506948  T
Q  101 gccatggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgc 171  Q
    ||  |||| || |  ||  || | |||||||||||||||||||||||||  | || ||| |||||||||||    
T  23506947 gcactggcgttgaaaggtggcgacgcctgtctcaactttgcagactcggccttgacgctccctattcctgc 23506877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 23506781 - 23506714
Alignment:
Q  105 tggcattaaggggccgctatgcctgtctcaactttgcagactcggtgtggaggcttcctattcctgcc 172  Q
    |||||||||| || ||| | |||||||||||||||||||||||||  | | |||||||||||||||||    
T  23506781 tggcattaagaggtcgcaacgcctgtctcaactttgcagactcggcctcgcggcttcctattcctgcc 23506714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University