View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_4 (Length: 555)
Name: NF14916_low_4
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 175 - 537
Target Start/End: Complemental strand, 1480890 - 1480528
Alignment:
| Q |
175 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgagaaaccctacatatttaagtgagtttggtggagtaaaaa |
274 |
Q |
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| T |
1480890 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa |
1480791 |
T |
|
| Q |
275 |
tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtcactttggcactttcactgaactaagcttaatg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1480790 |
tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggcactttcactgaactaagcttaatg |
1480691 |
T |
|
| Q |
375 |
actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctacaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1480690 |
actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc |
1480591 |
T |
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| Q |
475 |
aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa |
537 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1480590 |
aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa |
1480528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 1481111 - 1480939
Alignment:
| Q |
1 |
tacttaatactccatagtacataacacatacaactcaagaaaggctaaaagtcttttttcgcgagctttcttatactaaactcaagaaaggctaaaagtc |
100 |
Q |
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| T |
1481111 |
tacttaacactccgtagtacataacacatacaactcaagaaaggctaaaagtcttttttcgcgagctttcttattctaaactcaagaaaggctaaaagtc |
1481012 |
T |
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| Q |
101 |
tgtttttcacgagctttcttatactaaaatagaagcctcaatacacaaacaaaattacaccatcaatctccta |
173 |
Q |
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| T |
1481011 |
tgtttttcacgagctttcttatactaaaatagaagcctcaatacacaaacaaaattacaccatcaatctccta |
1480939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 428 - 521
Target Start/End: Complemental strand, 43060986 - 43060897
Alignment:
| Q |
428 |
caaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa |
521 |
Q |
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| T |
43060986 |
caaaaaccagctttgaactatgcagaaaattacctcaaagttgctccaat----gcagaaaatcaccttgaaccaactatgaattatgcagaaa |
43060897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 43061471 - 43061410
Alignment:
| Q |
173 |
attgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatg |
234 |
Q |
| |
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|||||| || |||||| |||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
43061471 |
attgttacaactttcattgtcgtctccaattctcatattgttgcaacatcgtgcatactatg |
43061410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 175 - 537
Target Start/End: Complemental strand, 19180694 - 19180332
Alignment:
| Q |
175 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgagaaaccctacatatttaagtgagtttggtggagtaaaaa |
274 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19180694 |
tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa |
19180595 |
T |
|
| Q |
275 |
tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtcactttggcactttcactgaactaagcttaatg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19180594 |
tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggcactttcactgaactaagcttaatg |
19180495 |
T |
|
| Q |
375 |
actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctacaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc |
474 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19180494 |
actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc |
19180395 |
T |
|
| Q |
475 |
aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19180394 |
aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaa |
19180332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 246 - 389
Target Start/End: Original strand, 42801375 - 42801519
Alignment:
| Q |
246 |
atatttaagtgagtttggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaatta-atgatattaatataataattcttttgtcac |
344 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
42801375 |
atatttaagtgagttgggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaattatattatattaatataataattcttttgtcac |
42801474 |
T |
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| Q |
345 |
tttggcactttcactgaactaagcttaatgactcagatgttcact |
389 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
42801475 |
tttggcactttcactaaactgagcttaatgactcagatgttcact |
42801519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 521
Target Start/End: Complemental strand, 1380398 - 1380306
Alignment:
| Q |
429 |
aaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa |
521 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| ||| ||||||||||| | | ||||| | ||| ||||| |||||||||||||||||| |
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| T |
1380398 |
aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaattatgcagaaa |
1380306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 521
Target Start/End: Complemental strand, 7313585 - 7313493
Alignment:
| Q |
429 |
aaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa |
521 |
Q |
| |
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||||| |||||||||||| ||||||| |||||||| ||| ||||||||||| | | ||||| | ||| ||||| ||| ||||||||||||| |
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| T |
7313585 |
aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctccaaattatgcagaaa |
7313493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 511
Target Start/End: Complemental strand, 50862572 - 50862491
Alignment:
| Q |
430 |
aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat |
511 |
Q |
| |
|
|||| ||||||| || | |||||||||| ||||| | || ||||||||||| ||| |||| ||||||||||| |||||||| |
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| T |
50862572 |
aaaatcagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaat |
50862491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 511
Target Start/End: Original strand, 49233905 - 49233986
Alignment:
| Q |
430 |
aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat |
511 |
Q |
| |
|
|||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| ||||||||||| |||||||| |
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| T |
49233905 |
aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaat |
49233986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 511
Target Start/End: Original strand, 49234476 - 49234558
Alignment:
| Q |
430 |
aaaaccagctctgaactttgca-gaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat |
511 |
Q |
| |
|
|||||||||||| || | |||| |||||| ||||| | || ||||||||||| ||||||||| ||||||||||| |||||||| |
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| T |
49234476 |
aaaaccagctctaaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaaccagctctgaat |
49234558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 511
Target Start/End: Complemental strand, 24455893 - 24455812
Alignment:
| Q |
430 |
aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat |
511 |
Q |
| |
|
|||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| ||||||||||| |||||||| |
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|
| T |
24455893 |
aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaat |
24455812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 511
Target Start/End: Complemental strand, 43228088 - 43228048
Alignment:
| Q |
471 |
ctccaaattaagcataaaatcaccttgaaccaactctgaat |
511 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||| |
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|
| T |
43228088 |
ctccaaattatgcagaaaattaccttgaaccaactctgaat |
43228048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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