View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_5 (Length: 517)
Name: NF14916_low_5
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 49690575 - 49691059
Alignment:
| Q |
18 |
ccttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagt |
117 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| | |
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| T |
49690575 |
ccttttgttctctcatttgactgtgttactgctacttgtcttaactaggaaaggaaatggacacagtggtgattgtccagactcatttggttgtggaaat |
49690674 |
T |
|
| Q |
118 |
cttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagt |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49690675 |
cttgggttttttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagt |
49690774 |
T |
|
| Q |
218 |
atgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcac |
317 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49690775 |
atgtccagttaaccaaaagaggaaaactcttccaagttaaaaagattgataatcactggtccattggcaacactatttccattattgaccccaatatcac |
49690874 |
T |
|
| Q |
318 |
caagcttttggagaaaaatgcttgtgaggcattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||| |||||||||||||| |
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| T |
49690875 |
caagcttttggagaaaaatgcttgtgaggcattcagctatgttaatattaccctccctcctcccactccttttggaac-tttttttatgaaaaactacat |
49690973 |
T |
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| Q |
418 |
aacagctttcaaatgcaaccatacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatg |
503 |
Q |
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| T |
49690974 |
aacagctttcaaatgcaaccatacccgaaaattaggcattcaccctccaagtaatttcttcataaatagttcttgtcatccctatg |
49691059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Original strand, 49678949 - 49679425
Alignment:
| Q |
19 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtc |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49678949 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaa--- |
49679045 |
T |
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| Q |
119 |
ttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagta |
218 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49679046 |
-----ttgattaaatacccttttacaacagttgaattcccaagctgtggtacattggcaattcaaggttgtgataatctcaacaaaactgctatgaagca |
49679140 |
T |
|
| Q |
219 |
tgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcacc |
318 |
Q |
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|||||||||| |||| | ||||||||||| ||||||| ||| |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49679141 |
cgtccagttaaccaaaggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcacc |
49679240 |
T |
|
| Q |
319 |
aagcttttggagaaaaatgcttgtgaggcattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacata |
418 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
49679241 |
aagcttttggagaagaatgcttgtgaggcattcagccatgttaatattacactccttccttcctctccttttggaacttttttttatgaaaaactacata |
49679340 |
T |
|
| Q |
419 |
acagctttcaaatgcaaccatacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatg |
503 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49679341 |
acagctttcaaatgcaaccgtacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatg |
49679425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 19 - 487
Target Start/End: Original strand, 49686316 - 49686774
Alignment:
| Q |
19 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaagtc |
118 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49686316 |
cttttgttctctcatttgactgtgttactgctacttgtcttaactagtaaaggaaatggacacagtgatgattgtccagaatcatttgattgtggaaatc |
49686415 |
T |
|
| Q |
119 |
ttgggtttcttaaatacccttttacaacagttgaattcccaagctgtggtgcattggcaattcaaggttgtgataatctcaacaaaactgctatgaagta |
218 |
Q |
| |
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|||| || || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |
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| T |
49686416 |
ttggattggttggctacccttttaccacagttgaattcccaaactgtggtgcattggcaattcaaggttgtgacgatctcaacaaaactgctacgaaaca |
49686515 |
T |
|
| Q |
219 |
tgtccagttaatcaaaagtggaaaactcttccaagttaaaaagattgataatcactggtccattggcaaccctatttccattattgaccccaatatcacc |
318 |
Q |
| |
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|||||||| | |||| | ||||||| ||| ||||||| ||| ||| | ||| | || | |||| ||||||||||| |||| | ||| ||||| |
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| T |
49686516 |
cgtccagtttaccaaaggaggaaaacactttcaagttacaaacattaaaaatgagcggcc------caacactatttccattgttgatctgaatttcacc |
49686609 |
T |
|
| Q |
319 |
aagcttttggagaaaaatgcttgtgaggcattcagccatgttaatattacactccctccttcctctccttttggaacnnnnnnnnatgaaaaactacata |
418 |
Q |
| |
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||||||||| ||||||||||||| ||||| || ||| ||| |||| || ||||||||| |||||||||||||||| |||||| || ||||| |
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| T |
49686610 |
aagcttttgcagaaaaatgcttgcgaggcctttagctatg---atatcactctccctcctccctctccttttggaac-tttttatatgaaagacaacata |
49686705 |
T |
|
| Q |
419 |
acagctttcaaatgcaaccatacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagt |
487 |
Q |
| |
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|||||||||||||||| |||||||| |||||||| || | | || |||| ||||||||||| ||||||| |
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| T |
49686706 |
acagctttcaaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagt |
49686774 |
T |
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