View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14916_low_7 (Length: 467)

Name: NF14916_low_7
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14916_low_7
NF14916_low_7
[»] chr1 (2 HSPs)
chr1 (18-451)||(48491978-48492412)
chr1 (18-103)||(51285873-51285958)
[»] chr5 (3 HSPs)
chr5 (220-451)||(19907581-19907812)
chr5 (248-451)||(27692526-27692729)
chr5 (19-55)||(5667957-5667993)
[»] chr7 (6 HSPs)
chr7 (248-451)||(44371003-44371206)
chr7 (248-451)||(44379857-44380060)
chr7 (248-451)||(23559359-23559562)
chr7 (18-121)||(32636253-32636356)
chr7 (19-55)||(13326084-13326120)
chr7 (19-55)||(13338420-13338456)
[»] chr6 (1 HSPs)
chr6 (248-451)||(20714390-20714593)
[»] chr4 (2 HSPs)
chr4 (248-451)||(49227727-49227930)
chr4 (411-451)||(15857343-15857383)


Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 48491978 - 48492412
Alignment:
Q  18 tgaaacaaccaaaatatcgaccacaaatctaagctacacaacaaccaaactccagaagattctatcattcggaagctgctaataatcaccacacagtcca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48491978 tgaaacaaccaaaatatcgaccacaaatctaagctacacaacaaccaaactccagaagattctatcattcggaagctgctaataatcaccacacagtcca 48492077  T
Q  118 aaaggnnnnnnnccaaaacagaatactaccgaaaatgctgcaaacccaacacactgatgagatatgacacaaaaccaagagaaataacaaaagaaatgca 217  Q
    ||||        |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48492078 aaagcaaaaaaaccaaaacagaatactaccaaaaatgctgcaaacccaacacactgatgagatatgacacaaaaccaagagaaataacaaaagaaatgca 48492177  T
Q  218 tcagaaactagggaacatatacaaccattgattgctagctaagaatccatccaatctagcttttatgtgatgaaaatatccccaatatagcccaaatcaa 317  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  48492178 ttagaaactagggaacatatacaaccattgattgctagctaagaatccatccaatctagcttttatgtgatgaaaatatccccaatatagcccaaaccag 48492277  T
Q  318 ttaagccacactgttggatagtgtctttgaaccggtttgtaatactactgtcagcaagattacctcca-nnnnnnnnncagcttgacccaaaatcaaatc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||    
T  48492278 ttaagccacactgttggatagtgtctttgaaccggtttgtaatactactgtcagcaagattacctccattttttttttcagcttgacccaaaatcaaatc 48492377  T
Q  417 gaaatcaccaaaaactgacaacctatttctagaat 451  Q
    |||||||||||||||| ||||||||||||||||||    
T  48492378 gaaatcaccaaaaactaacaacctatttctagaat 48492412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 51285958 - 51285873
Alignment:
Q  18 tgaaacaaccaaaatatcgaccacaaatctaagctacacaacaaccaaactccagaagattctatcattcggaagctgctaataat 103  Q
    |||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51285958 tgaaaccaccaaaatatagacaacaaatctaagctacagaacaaccaaactccagaagattctatcattcggaagctgctaataat 51285873  T

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Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 220 - 451
Target Start/End: Complemental strand, 19907812 - 19907581
Alignment:
Q  220 agaaactagggaacatatacaaccattgattgctagctaagaatccatccaatctagcttttatgtgatgaaaatatccccaatatagcccaaatcaatt 319  Q
    ||||| ||||||||||| |||||||||||||   | |||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||| |     
T  19907812 agaaattagggaacataaacaaccattgattaaaaactaagaatctgtccaatctagcttttatgtgatgaaaatatccccaatgtagcccaaatcatta 19907713  T
Q  320 aagccacactgttggatagtgtctttgaaccggtttgtaatactactgtcagcaagattacctccannnnnnnnncagcttgacccaaaatcaaatcgaa 419  Q
    ||||||| ||| |||||||||||||||||| |||| ||||||||||| |||  | |||||||||||         ||||||||| ||||| ||||| |||    
T  19907712 aagccacgctgctggatagtgtctttgaactggttagtaatactactatcaataggattacctccatttttttcccagcttgacacaaaaccaaattgaa 19907613  T
Q  420 atcaccaaaaactgacaacctatttctagaat 451  Q
    ||||||||||||| || |||||||||||||||    
T  19907612 atcaccaaaaactaaccacctatttctagaat 19907581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 248 - 451
Target Start/End: Complemental strand, 27692729 - 27692526
Alignment:
Q  248 attgctagctaagaatccatccaatctagcttttatgtgatgaaaatatccccaatatagcccaaatcaattaagccacactgttggatagtgtctttga 347  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||| ||| ||||||||||||||||    
T  27692729 attgctaactaagaatctgtccaatctagcttttatgtgatgaaaatatccccaatgtagctcaaatcattaaagccacgctgctggatagtgtctttga 27692630  T
Q  348 accggtttgtaatactactgtcagcaagattacctccannnnnnnnncagcttgacccaaaatcaaatcgaaatcaccaaaaactgacaacctatttcta 447  Q
    || |||| ||||||||||| |||  | |||||||||||         ||||||||| ||||| ||||| ||||||| |||||||| || |||||||||||    
T  27692629 actggttagtaatactactatcaataggattacctccattttttttccagcttgacacaaaaccaaattgaaatcaacaaaaactaaccacctatttcta 27692530  T
Q  448 gaat 451  Q
    ||||    
T  27692529 gaat 27692526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 5667957 - 5667993
Alignment:
Q  19 gaaacaaccaaaatatcgaccacaaatctaagctaca 55  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  5667957 gaaaccaccaaaatatcgaccacaaatctgagctaca 5667993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 248 - 451
Target Start/End: Complemental strand, 44371206 - 44371003
Alignment:
Q  248 attgctagctaagaatccatccaatctagcttttatgtgatgaaaatatccccaatatagcccaaatcaattaagccacactgttggatagtgtctttga 347  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||| ||| ||||||||||||||||    
T  44371206 attgctaactaagaatctgtccaatctagcttttatgtgatgaaaatatccccaatgtagctcaaatcattaaagccacgctgctggatagtgtctttga 44371107  T
Q  348 accggtttgtaatactactgtcagcaagattacctccannnnnnnnncagcttgacccaaaatcaaatcgaaatcaccaaaaactgacaacctatttcta 447  Q
    || |||| ||||||||||| |||  | |||||||||||         ||||||||| ||||| ||||| ||||||| |||||||| || |||||||||||    
T  44371106 actggttagtaatactactatcaataggattacctccattttttttccagcttgacacaaaaccaaattgaaatcaacaaaaactaaccacctatttcta 44371007  T
Q  448 gaat 451  Q
    ||||    
T  44371006 gaat 44371003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 248 - 451
Target Start/End: Complemental strand, 44380060 - 44379857
Alignment:
Q  248 attgctagctaagaatccatccaatctagcttttatgtgatgaaaatatccccaatatagcccaaatcaattaagccacactgttggatagtgtctttga 347  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||| ||| ||||||||||||||||    
T  44380060 attgctaactaagaatctgtccaatctagcttttatgtgatgaaaatatccccaatgtagctcaaatcattaaagccacgctgctggatagtgtctttga 44379961  T
Q  348 accggtttgtaatactactgtcagcaagattacctccannnnnnnnncagcttgacccaaaatcaaatcgaaatcaccaaaaactgacaacctatttcta 447  Q
    || |||| ||||||||||| |||  | |||||||||||         ||||||||| ||||| ||||| ||||||| |||||||| || |||||||||||    
T  44379960 actggttagtaatactactatcaataggattacctccattttttttccagcttgacacaaaaccaaattgaaatcaacaaaaactaaccacctatttcta 44379861  T
Q  448 gaat 451  Q
    ||||    
T  44379860 gaat 44379857  T

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Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 248 - 451
Target Start/End: Original strand, 23559359 - 23559562
Alignment:
Q  248 attgctagctaagaatccatccaatctagcttttatgtgatgaaaatatccccaatatagcccaaatcaattaagccacactgttggatagtgtctttga 347  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||| | | ||||||||||||||||    
T  23559359 attgctaactaagaatctgtccaatctagcttttatgtgatgaaaatatccccaatgtagctcaaatcattaaagccacgccgctggatagtgtctttga 23559458  T
Q  348 accggtttgtaatactactgtcagcaagattacctccannnnnnnnncagcttgacccaaaatcaaatcgaaatcaccaaaaactgacaacctatttcta 447  Q
    || |||| ||||||||||| |||  | |||||||||||         ||||||||| ||||| ||||| ||||||| |||||||| || |||||||||||    
T  23559459 actggttagtaatactactatcaataggattacctccattttttttccagcttgacacaaaaccaaattgaaatcaacaaaaactaaccacctatttcta 23559558  T
Q  448 gaat 451  Q
    ||||    
T  23559559 gaat 23559562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 32636356 - 32636253
Alignment:
Q  18 tgaaacaaccaaaatatcgaccacaaatctaagctacacaacaaccaaactccagaagattctatcattcggaagctgctaataatcaccacacagtcca 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  32636356 tgaaaccaccaaaatatcgaccacaaatctaagctacacaacaaccaaagtccggaagattctatcattcggaagctgctaataatcaccacacaatcca 32636257  T
Q  118 aaag 121  Q
    ||||    
T  32636256 aaag 32636253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 13326084 - 13326120
Alignment:
Q  19 gaaacaaccaaaatatcgaccacaaatctaagctaca 55  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  13326084 gaaaccaccaaaatatcgaccacaaatctgagctaca 13326120  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 13338420 - 13338456
Alignment:
Q  19 gaaacaaccaaaatatcgaccacaaatctaagctaca 55  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  13338420 gaaaccaccaaaatatcgaccacaaatctgagctaca 13338456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 248 - 451
Target Start/End: Complemental strand, 20714593 - 20714390
Alignment:
Q  248 attgctagctaagaatccatccaatctagcttttatgtgatgaaaatatccccaatatagcccaaatcaattaagccacactgttggatagtgtctttga 347  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||| ||| ||||||||||||||||    
T  20714593 attgctaactaagaatctgtccaatctagcttttatgtgatgaaaatatccccaatgtagctcaaatcattaaagccacgctgctggatagtgtctttga 20714494  T
Q  348 accggtttgtaatactactgtcagcaagattacctccannnnnnnnncagcttgacccaaaatcaaatcgaaatcaccaaaaactgacaacctatttcta 447  Q
    || |||| ||||||||||| |||  | |||||||||||         ||||||||| ||||| ||||| ||||||| |||||||| || |||||||||||    
T  20714493 actggttagtaatactactatcaataggattacctccattttttttccagcttgacacaaaaccaaattgaaatcaacaaaaactaaccacctatttcta 20714394  T
Q  448 gaat 451  Q
    ||||    
T  20714393 gaat 20714390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 248 - 451
Target Start/End: Complemental strand, 49227930 - 49227727
Alignment:
Q  248 attgctagctaagaatccatccaatctagcttttatgtgatgaaaatatccccaatatagcccaaatcaattaagccacactgttggatagtgtctttga 347  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||| ||| ||||||||||||||||    
T  49227930 attgctaactaagaatctgtccaatctagcttttatgtgatgaaaatatccccaatgtagctcaaatcattaaagccacgctgctggatagtgtctttga 49227831  T
Q  348 accggtttgtaatactactgtcagcaagattacctccannnnnnnnncagcttgacccaaaatcaaatcgaaatcaccaaaaactgacaacctatttcta 447  Q
    || |||| ||||||||||| |||  | |||||||||||         ||||||||| ||||| ||||| ||||||| |||||||| || |||||||||||    
T  49227830 actggttagtaatactactatcaataggattacctccattttttttccagcttgacacaaaaccaaattgaaatcaacaaaaactaaccacctatttcta 49227731  T
Q  448 gaat 451  Q
    ||||    
T  49227730 gaat 49227727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 15857343 - 15857383
Alignment:
Q  411 caaatcgaaatcaccaaaaactgacaacctatttctagaat 451  Q
    ||||| |||||||||||||||| || |||||||||||||||    
T  15857343 caaattgaaatcaccaaaaactaaccacctatttctagaat 15857383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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