View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14916_low_8 (Length: 462)
Name: NF14916_low_8
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 32313393 - 32313838
Alignment:
| Q |
1 |
aataataaatatagaaaacatgactctacatcgtggtcgtcgttctagagtttcattctggtaaatcgaacgcatctagttgatcaacactaaccatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32313393 |
aataataaatatagaaaacatgactctacatcgtcgtcatcgttttagagtttcattctggtaaatcgaacgcatctagttgatcagcactaaccatcct |
32313492 |
T |
|
| Q |
101 |
agagtttcattc-tagtgaaccgaacgcatctagtttcattctgagtcaatcgacgaacaacgatagtcaaaacttatcatctttcttgtgtcattgtgg |
199 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32313493 |
agagtttcattcctagtgaaccgaacgcatctagtttcattatgagtcaatcgacgaacaacgatagtcaaaacttatcatctttcttgtgtcattgtgg |
32313592 |
T |
|
| Q |
200 |
tagagacaagcatcaatttggtttagttgatcatttagataagacattttaacatcaacatttaccctgaatagattgggtttttcttttgttgtagtaa |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
32313593 |
tagagacaaacatcaatttggtttagttgatcatttaagtaacacattttaacatcaacatttaccctaaatagattcggtttttcttttgttgtagtaa |
32313692 |
T |
|
| Q |
300 |
actacaataataaatagagttcagagatggccctgcccttgtaattaagggtgtgctagtttaaaaaccaaaagcaaatattagttttggtttgcaatac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32313693 |
actacaataataaatagagttcagagatggccctacccttgtaattaagggtgtgcaagtttaaaaaccaaaaccaaatattagttttggtttgcaatac |
32313792 |
T |
|
| Q |
400 |
acttgctcagattttgcaaccagatagcagttctgcaccaccatctg |
446 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32313793 |
acttgctcagattttgcaacc-tatagcagttctgcaccaccatctg |
32313838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University