View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14916_low_9 (Length: 450)
Name: NF14916_low_9
Description: NF14916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14916_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 442
Target Start/End: Original strand, 1492162 - 1492591
Alignment:
| Q |
13 |
atatcctctctttcaaacatcacttggtttggtactttcacattgtctccttttgattcaattatattctttatccaaattaaacggcaattccaatatt |
112 |
Q |
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| T |
1492162 |
atatcctctcttgcaaacatcacttggtttggtactttcacattgtctccttttgattcaattatattctttatccaaattaaacggcaattccaatatt |
1492261 |
T |
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| Q |
113 |
attctcttaaattaagctaaactacacatgacaaaatgtgattatgcagctatcagttgactaagaaaaatagactttcatgctaaattacaaaagctac |
212 |
Q |
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| T |
1492262 |
attctgttaaattaagctaaacttcacatgacaaaatgtaattatgcagctatcagttgactaagaaaaatagactttcatgctaaattacaaaagctac |
1492361 |
T |
|
| Q |
213 |
tttttgtttctgaatttttgctgattagtgtatggttttttgcaggttattaaaatgagtcaagtttttagtgatgatgctgtgtcaagggccatggaag |
312 |
Q |
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| T |
1492362 |
tttttgtttctgaatttttgctgattagtgtatggttttttgcaggttattaaaatgagtcaagtttttagtgatgatgctgtgtcaagggccatggaag |
1492461 |
T |
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| Q |
313 |
aaataaagagcaatccttcatcacgtagacacggtggtgctattcttccagatatgcacaaagtttcaagtcctcctaagcagacacttttccaagattt |
412 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1492462 |
aaataaagagcaatccttcatcacgtggacacggtggtgctattcttccacatatgcacaaagtttcaggtcctcctaagcagacacttttccaagattt |
1492561 |
T |
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| Q |
413 |
caaacacaatttcaatgaaactttcttctc |
442 |
Q |
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| T |
1492562 |
caaacacagtttcaatgaaactttcttctc |
1492591 |
T |
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