View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14917_high_10 (Length: 434)
Name: NF14917_high_10
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 38709477 - 38709068
Alignment:
| Q |
18 |
atatctactaaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38709477 |
atatctactaaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaatttcgatgcat |
38709378 |
T |
|
| Q |
118 |
tcaagaactaaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttcgatttcatcatcaccaatgacctcatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38709377 |
tcaagaactaaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttccgtttcatcatcaccaatgacctcatat |
38709278 |
T |
|
| Q |
218 |
ccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38709277 |
ccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcaccccagtttcagcattaacaatctctccattcttttccacac |
38709178 |
T |
|
| Q |
318 |
ggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38709177 |
ggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccac |
38709078 |
T |
|
| Q |
418 |
attcttctca |
427 |
Q |
| |
|
|||||||||| |
|
|
| T |
38709077 |
attcttctca |
38709068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 174 - 427
Target Start/End: Complemental strand, 10047358 - 10047105
Alignment:
| Q |
174 |
ataaagcttaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgactt |
273 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
10047358 |
ataaagcttactcttccatttcatcatcgccaatgacctcatatccattttcaccgacaatttttggtccatttggtatctgaatcaaaatatctgactt |
10047259 |
T |
|
| Q |
274 |
catcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctca |
373 |
Q |
| |
|
|| ||||||||||||||| |||||| ||||||||||||| ||| ||||| ||| |||||||||||||||||| |||||||| | |||||||| |||||| |
|
|
| T |
10047258 |
caccccagtttcagcatttacaatccctccattcttttcgacacggtataccaaatcacttcccttaggaccagcatcaatgcaaacagttgtattctca |
10047159 |
T |
|
| Q |
374 |
tcaattttttcctttatatacatcatagccagctcactcaccacattcttctca |
427 |
Q |
| |
|
||||||| |||| ||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
10047158 |
tcaatttcttcccttataagcatcatagatagctctgtcaccacattcttctca |
10047105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 10047424 - 10047360
Alignment:
| Q |
64 |
ccaaaagaactaataaaagagatacttgtg-aatatgtttgcaagttcgatgcattcaagaacta |
127 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||||||| |||||| |||||||| |||| |
|
|
| T |
10047424 |
ccaaaacaactgataaaagagatacttgtgcgatatgtttgcaatttcgatacattcaaggacta |
10047360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 248 - 380
Target Start/End: Complemental strand, 45468976 - 45468844
Alignment:
| Q |
248 |
ggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcacttcccttaggaccaa |
347 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||| |||||| ||| || ||||||||||||||| |
|
|
| T |
45468976 |
ggtatctgaatcaatatatcagacttcaccccagtttcagcattaacaatccctccattcttttctacacggtatgccaaatcgcttcccttaggaccag |
45468877 |
T |
|
| Q |
348 |
catcaatgtatacagttgtgttctcatcaattt |
380 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||||| |
|
|
| T |
45468876 |
catctatgtaaaccgttgtattctcatcaattt |
45468844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 234 - 427
Target Start/End: Original strand, 739517 - 739710
Alignment:
| Q |
234 |
tttttggtcaagttggtatctgtatcaaaatatctgacttcatcccagtttcagcattaacaatctctccattcttttccacatggtatgacaagtcact |
333 |
Q |
| |
|
||||||||| | ||| |||||| ||||||||||| ||||||| ||| |||||||||||||||||||| || | ||||| || ||| | ||| |||| |
|
|
| T |
739517 |
tttttggtccatttgttatctgaatcaaaatatccgacttcaccccgatttcagcattaacaatctcttcactattttctgcacggtgtaccaaaccact |
739616 |
T |
|
| Q |
334 |
tcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttcctttatatacatcatagccagctcactcaccacattcttctca |
427 |
Q |
| |
|
||| |||||| || |||| ||||| || ||||| || |||||||||| |||| ||||| |||| ||| |||||| |||| || ||||||||| |
|
|
| T |
739617 |
tccattaggatcagcatcgatgtaaactgttgtattttcatcaatttcttcccttataagcatcctagacagctctgtcactaccttcttctca |
739710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 25078763 - 25078815
Alignment:
| Q |
72 |
actaataaaagagatacttgtgaatatgtttgcaagttcgatgcattcaagaa |
124 |
Q |
| |
|
|||||||||||||| ||| ||| || ||||||||| |||||| |||||||||| |
|
|
| T |
25078763 |
actaataaaagagacactcgtggatgtgtttgcaatttcgatacattcaagaa |
25078815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 535818 - 535745
Alignment:
| Q |
46 |
ttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagttcgatgcattc |
119 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||||||| |||||| ||||| |
|
|
| T |
535818 |
ttaaaacaaatttgaggaccaaagtgactaataaattagacacttgtgaatatgtttgcaatttcgatacattc |
535745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University