View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14917_high_17 (Length: 316)

Name: NF14917_high_17
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14917_high_17
NF14917_high_17
[»] chr5 (1 HSPs)
chr5 (1-293)||(7763724-7764013)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 7763724 - 7764013
Alignment:
Q  1 taggattagttaatgttttgtatttcaagtttggtgaagaatgaaaatcaagtgggatggttgtgtttgttttagaaagaaaaacttgtggtggaagatg 100  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||    
T  7763724 taggattaattaatgttttgtatttcaagtttggtgaaaaatgaaaatcaatttggatggttgtgtttgttttagaaagaaaaacttgcggtggaagatg 7763823  T
Q  101 tcaaggcattttttgtatggggtgtttggtttggatggataatatcaatatcaaacttttggagggcattcatgaatttttaaccaccttaatttcttag 200  Q
    ||||||||||||||||| ||| ||||||||||||||||||      |||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  7763824 tcaaggcattttttgtaagggatgtttggtttggatggat------aatatcaaacttttggagggcattcatgaatttttaacgagcttaatttcttag 7763917  T
Q  201 tcatgtttggaataactgtgaatttga---tgttcaaattttgaactatacacactctagtttaggcaaaaatttactttttaggtttatcgaata 293  Q
    ||||||||||| ||| ||||| |||||   |||| |||||||||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  7763918 tcatgtttggattaaatgtgagtttgatgttgttgaaattttgaactgtacaccctctagtttaagcaaaaatttactttttaggttcatcgaata 7764013  T

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