View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_high_23 (Length: 284)
Name: NF14917_high_23
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_high_23 |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 52800484 - 52800280
Alignment:
| Q |
71 |
gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagcaagtgaagaaacctcgagaac |
170 |
Q |
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| T |
52800484 |
gaggaaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcacgagttcgataagttacatgagcaagtgaagaaacctcgagaac |
52800385 |
T |
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| Q |
171 |
aggttgctgacgctgaagcatttctagatctgacacgcactcttgttgaatccattaaatctcttgtcaacgaaggtgttactccttctcagtttgtttc |
270 |
Q |
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| T |
52800384 |
aggttgctgacgctgaagcacttctagatctgacacgcactcttgttggatccgttaaatctcttgtcaacgaaggtgttactccttctcagtttgtttc |
52800285 |
T |
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| Q |
271 |
atctc |
275 |
Q |
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||||| |
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| T |
52800284 |
atctc |
52800280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 52800603 - 52800548
Alignment:
| Q |
16 |
cagtatttgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
71 |
Q |
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| T |
52800603 |
cagtattcgcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
52800548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 75 - 275
Target Start/End: Complemental strand, 31984 - 31784
Alignment:
| Q |
75 |
aaaaagatgatttgatgaacggtgattcagagaagttcgattcaatccttcatgagttcgataagttacacgagcaagtgaagaaacctcgagaacaggt |
174 |
Q |
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| T |
31984 |
aaaaagatgatttaatgaacactgcttcggacaagttcgattcaatccttcatgacttcgacaagttagacgagcaagtgaagaagccacaagagcagat |
31885 |
T |
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| Q |
175 |
tgctgacgctgaagcatttctagatctgacacgcactcttgttgaatccattaaatctcttgtcaacgaaggtgttactccttctcagtttgtttcatct |
274 |
Q |
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| T |
31884 |
tgttgacgctgaagcacttctagatctgacacgcactctggttggatcggttaactctatggtgaacgaaggggttactccttctcagtttgtgtcatct |
31785 |
T |
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| Q |
275 |
c |
275 |
Q |
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| T |
31784 |
c |
31784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 32117 - 32070
Alignment:
| Q |
24 |
gcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
71 |
Q |
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| T |
32117 |
gcagaatcatccgctccgagttcttcaaactcaagtctcttatcaatg |
32070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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