View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_high_32 (Length: 237)
Name: NF14917_high_32
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32886235 - 32886014
Alignment:
| Q |
1 |
tattttatttttggtgcaatgtaaggaaattaaagggcgaggaatacaattaatttgactagctatagaagactgccacattcacttggcagggtcaaag |
100 |
Q |
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| T |
32886235 |
tattttatttttggtgcaatgtaaggaaattaaagggcgaggaatacaattaatttgactagctatagaagactgccacattcacttggcagggtcaaag |
32886136 |
T |
|
| Q |
101 |
atacgccaaatattggttggttattcaaagcttattggattctggatatcttcaagaacctgtaaagtatataggaaaagataaatattattagtaaatt |
200 |
Q |
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| T |
32886135 |
atacgccaaatattggttggttattcaaagcttattggattctggatatcttcaagaacctgtaaagtatataggaaaagataaatattattagtaaatt |
32886036 |
T |
|
| Q |
201 |
aagcagaaattattatgcatac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
32886035 |
aagcagaaattattatgcatac |
32886014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 32899788 - 32899686
Alignment:
| Q |
99 |
agatacgccaaatattggttggttattcaaagcttattggattctggatatcttcaagaacctgtaaagtatataggaaaagataaatattattagtaaa |
198 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| | |
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| T |
32899788 |
agatacgccaaatattggttggttattcaa-gcttattggattctggatatcttcaagaacctgagaagtatataggaaaagttaaactttattagtata |
32899690 |
T |
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| Q |
199 |
ttaa |
202 |
Q |
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|||| |
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| T |
32899689 |
ttaa |
32899686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 32881995 - 32881928
Alignment:
| Q |
3 |
ttttatttttggtgcaatgtaaggaaattaaagggcgaggaatacaattaatttgactagctatagaa |
70 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32881995 |
ttttatttttggtacaatgtaaggaaattaaagggtgaggaatacaattaatttgactagctatagaa |
32881928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 32881812 - 32881726
Alignment:
| Q |
97 |
aaagatacgccaaatattggttggttattcaaagcttattggattctgg--atatcttcaagaacctgtaaagtatataggaaaagat |
182 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||| |||||||||||||| |
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| T |
32881812 |
aaagatacaccaaatattggttggttattc-aagcttattgtgttctggatatatcttcaagaacctgcgaagcatataggaaaagat |
32881726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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