View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14917_high_35 (Length: 231)
Name: NF14917_high_35
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_high_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 38081667 - 38081454
Alignment:
| Q |
1 |
ataggataggccctcaaagtcatggcccccactacgggttcgaatctggaggccatgattttgggaacaaattatggctgtttgaatatgggaaggttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38081667 |
ataggataggccctcaaagtcatggcccccactacgggttcgaatctggaggccatgattttgggaacaaattatggctgtttgaatatgggaaggttct |
38081568 |
T |
|
| Q |
101 |
agaggtgtgatgatgacaagtggttttggtgttttgtaggatgcaaatctgagattttgagttgtaaatttgagtactggtgagtaagagggattggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38081567 |
agaggtgtgatgatgacaagtggttttggtgttttgtaggatgcaaatcttagattttgagttgtaaatttgagtactggtgagtaagagggattggttt |
38081468 |
T |
|
| Q |
201 |
tggtgtacacaact |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38081467 |
tggtgtacacaact |
38081454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 38072572 - 38072369
Alignment:
| Q |
11 |
ccctcaaagtcatggcccccactacgggttcgaatctggaggccatgattttgggaacaaattatggctgtttgaatatgggaaggttctagaggtgtga |
110 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||||| || | |||||| | ||||||||| |||||||||||||||||||||||| || | |||||||| |
|
|
| T |
38072572 |
ccctcgaagtcgtggccaccactacgaattcgaatttgcatgccatggtgttgggaacagattatggctgtttgaatatgggaaatttgtgtaggtgtga |
38072473 |
T |
|
| Q |
111 |
tgatgacaagtggttttggtgttttgtaggatgcaaatctgagattttgagttgtaaatttgagtactggtgagtaagagggattggttttggtgtacac |
210 |
Q |
| |
|
| |||||||| ||||||||||||| | || |||||||||||| |||||| ||| ||||||||||| || ||||||||||| ||||||||| |||||||| |
|
|
| T |
38072472 |
taatgacaaggggttttggtgtttcattggttgcaaatctgaggttttgaattgaaaatttgagtattgatgagtaagaggaattggtttttgtgtacac |
38072373 |
T |
|
| Q |
211 |
aact |
214 |
Q |
| |
|
|||| |
|
|
| T |
38072372 |
aact |
38072369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 38062210 - 38062411
Alignment:
| Q |
11 |
ccctcaaagtcatggcccccactacgggttcgaatctggaggccatgattttgggaacaaattatggctgtttgaatatgggaaggttctagaggtgtga |
110 |
Q |
| |
|
||||| ||||| ||||| || || ||| |||||||||| ||| |||| |||||||||| ||||||| ||||||||| |||||| | | |||||||| |
|
|
| T |
38062210 |
ccctcgaagtcgtggccgccgcttcggattcgaatctgcaggtcatgtctttgggaacagattatggttgtttgaatttgggaaatatgtttaggtgtga |
38062309 |
T |
|
| Q |
111 |
tgatgacaagtggttttggtgttttgtaggatgcaaatctgagattttgagttgtaaatttgagtactggtgagtaagagggattggttttggtgtacac |
210 |
Q |
| |
|
| |||||||| ||||| |||||| | | |||||||||||||||||||||||| ||||||| ||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
38062310 |
taatgacaagaggtttcggtgttgttttggatgcaaatctgagattttgagtggtaaattggagtattgatgagtaagaggaattggttttggtgtacac |
38062409 |
T |
|
| Q |
211 |
aa |
212 |
Q |
| |
|
|| |
|
|
| T |
38062410 |
aa |
38062411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 38058244 - 38058041
Alignment:
| Q |
11 |
ccctcaaagtcatggcccccactacgggttcgaatctggaggccatgattttgggaacaaattatggctgtttgaatatgggaaggttctagaggtgtga |
110 |
Q |
| |
|
|||||||| |||||||| || || ||| |||||||||| ||| || |||| ||||| ||||||| ||||||||| |||||| | | |||||||| |
|
|
| T |
38058244 |
ccctcaaaatcatggccaccgcttcggattcgaatctgcaggttgtggatttgtgaacagattatggttgtttgaatttgggaaatctgtttaggtgtga |
38058145 |
T |
|
| Q |
111 |
tgatgacaagtggttttggtgttttgtaggatgcaaatctgagattttgagttgtaaatttgagtactggtgagtaagagggattggttttggtgtacac |
210 |
Q |
| |
|
| |||| ||| ||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
38058144 |
taatgaaaagaggtttaggtgttgtgttggatgcaaatctgagattttgagttgtaaatttgagtatcgatgagtaagaggaattggttttggtgtacac |
38058045 |
T |
|
| Q |
211 |
aact |
214 |
Q |
| |
|
|||| |
|
|
| T |
38058044 |
aact |
38058041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 38086082 - 38085879
Alignment:
| Q |
11 |
ccctcaaagtcatggcccccactacgggttcgaatctggaggccatgattttgggaacaaattatggctgtttgaatatgggaaggttctagaggtgtga |
110 |
Q |
| |
|
||||||||||| || || || || || |||||||||| |||| || | |||||||||||||| || || ||||||||||||| |||||||||||||| |
|
|
| T |
38086082 |
ccctcaaagtcgtgaccgccgctgcgaattcgaatctgcaggctgtggtattgggaacaaattacggttgcttgaatatgggaaatttctagaggtgtga |
38085983 |
T |
|
| Q |
111 |
tgatgacaagtggttttggtgttttgtaggatgcaaatctgagattttgagttgtaaatttgagtactggtgagtaagagggattggttttggtgtacac |
210 |
Q |
| |
|
|| |||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| || || ||| || | ||||| |||||||||||| |
|
|
| T |
38085982 |
caattacaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgatgtgtatgatgaattggctttggtgtacac |
38085883 |
T |
|
| Q |
211 |
aact |
214 |
Q |
| |
|
|||| |
|
|
| T |
38085882 |
aact |
38085879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University