View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14917_high_5 (Length: 578)

Name: NF14917_high_5
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14917_high_5
NF14917_high_5
[»] chr7 (7 HSPs)
chr7 (1-564)||(25533568-25534129)
chr7 (468-564)||(25526031-25526127)
chr7 (396-449)||(31418966-31419019)
chr7 (396-442)||(21453181-21453227)
chr7 (396-442)||(12003331-12003377)
chr7 (396-432)||(6472699-6472735)
chr7 (505-564)||(25540605-25540665)
[»] chr8 (6 HSPs)
chr8 (395-443)||(1667822-1667870)
chr8 (395-443)||(16658527-16658575)
chr8 (395-447)||(33360100-33360152)
chr8 (398-447)||(42808382-42808429)
chr8 (410-442)||(32381211-32381243)
chr8 (410-442)||(32435166-32435198)
[»] chr5 (7 HSPs)
chr5 (390-442)||(42740888-42740940)
chr5 (395-442)||(21745033-21745080)
chr5 (396-442)||(32863333-32863379)
chr5 (394-442)||(3173848-3173895)
chr5 (396-444)||(26063041-26063089)
chr5 (396-442)||(18740036-18740081)
chr5 (396-440)||(43299937-43299980)
[»] chr3 (4 HSPs)
chr3 (395-443)||(2339178-2339226)
chr3 (397-439)||(9456119-9456161)
chr3 (396-442)||(52893141-52893187)
chr3 (400-448)||(40922552-40922600)
[»] scaffold0005 (1 HSPs)
scaffold0005 (396-448)||(39323-39375)
[»] chr4 (8 HSPs)
chr4 (396-448)||(14800352-14800404)
chr4 (393-444)||(33754312-33754363)
chr4 (397-447)||(21421920-21421970)
chr4 (396-442)||(46164751-46164797)
chr4 (394-442)||(44504331-44504379)
chr4 (396-442)||(8433371-8433416)
chr4 (411-444)||(20037990-20038023)
chr4 (396-442)||(54785574-54785622)
[»] chr2 (1 HSPs)
chr2 (394-438)||(38978988-38979032)
[»] chr6 (3 HSPs)
chr6 (396-442)||(16497560-16497606)
chr6 (395-448)||(7170715-7170768)
chr6 (396-442)||(14125098-14125143)
[»] chr1 (3 HSPs)
chr1 (398-442)||(26014217-26014261)
chr1 (396-444)||(18994625-18994673)
chr1 (396-442)||(26354696-26354741)
[»] scaffold1160 (1 HSPs)
scaffold1160 (399-442)||(2168-2211)


Alignment Details
Target: chr7 (Bit Score: 512; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 25533568 - 25534129
Alignment:
Q  1 aaataaatgtttcatatctatcacaaatcacaaataaaaaacaacaagaaccatatccaatttcatctccaatttcaacttcaacaatttcaatggagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25533568 aaataaatgtttcatatctatcacaaatcacaaataaaaaacaacaagaaccatatccaatttcatctccaatttcaacttcaacaatttcaatggagaa 25533667  T
Q  101 gtgattaaagacttagtgtcgtttgcataattgacattcctttcactaaacattgctgctatattcaatttagccttatgggtcatagnnnnnnnactta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||    
T  25533668 gtgattaaagacttagtgtcgtttgcataattgacattcctttcactaaacattgctgctatattcaatttagccttatgggtcatattttttttactta 25533767  T
Q  201 ttctcttcattaactatcaaatccaaaatctcgatatagctacatctcacgacgacgaagctgcacgtggtgctacaataactcatgtttgttattgttt 300  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  25533768 ttctcttcattaactatcagatccaaaatctcgatatagctacatctcacgacgaccaagctgcacctggtgctacaataactcatgtttgttattgttt 25533867  T
Q  301 ccagaaacaaattgcagcttattgttaatggccaggcattgaagagataaagggtcgaggaagggtggagtcttgaaaatgggtcatgcgtggtgcagtg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25533868 ccagaaacaaattgcagcttattgttaatggccaggcattgaagagataaagggtcgaggaagggtggagtcttgaaaatgggtcatgcgtggtgcagtg 25533967  T
Q  401 gcggaactggggggtggcaagggggagccaccaccaccccattatttaaatgcttcctgtttatcccacaaaatagccaaacttgatacagtgttgcgtc 500  Q
    ||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25533968 gcggaact--ggggtggcaagggggagccaccgccaccccattatttaaatgcttcctgtttatcccacaaaatagccaaacttgatacagtgttgcgtc 25534065  T
Q  501 taaatgcttctaacaacatatttgtatataaaggtacatattcagtagctgaatgtgttcttag 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25534066 taaatgcttctaacaacatatttgtatataaaggtacatattcagtagctgaatgtgttcttag 25534129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 468 - 564
Target Start/End: Original strand, 25526031 - 25526127
Alignment:
Q  468 acaaaatagccaaacttgatacagtgttgcgtctaaatgcttctaacaacatatttgtatataaaggtacatattcagtagctgaatgtgttcttag 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25526031 acaaaatagccaaacttgatacagtgttgcgtctaaatgcttctaacgacatatttgtatatgaaggtacatattcagtagctgaatgtgttcttag 25526127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 396 - 449
Target Start/End: Original strand, 31418966 - 31419019
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccattatttaa 449  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  31418966 cagtggcggaaccggggggtggcaagggggagccaccgccaccccattatttaa 31419019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 21453227 - 21453181
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  21453227 cagtggcggaactggggggtggcaagggggagccaccgccaccccat 21453181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 12003377 - 12003331
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  12003377 cagtggcggaactggggggtggcaaggaggagccaccgccaccccat 12003331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 432
Target Start/End: Complemental strand, 6472735 - 6472699
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccacc 432  Q
    |||||||||||||||||||||||||||||||||||||    
T  6472735 cagtggcggaactggggggtggcaagggggagccacc 6472699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 564
Target Start/End: Original strand, 25540605 - 25540665
Alignment:
Q  505 tgcttctaacaacatatttgtatat-aaaggtacatattcagtagctgaatgtgttcttag 564  Q
    |||||||||||||||| |||||||| |||||||||| ||  |||  |||||||||||||||    
T  25540605 tgcttctaacaacatagttgtatatgaaaggtacatgttaggtaaatgaatgtgttcttag 25540665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 1667822 - 1667870
Alignment:
Q  395 gcagtggcggaactggggggtggcaagggggagccaccaccaccccatt 443  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1667822 gcagtggcggaactggggggtggcaagggggagccaccgccaccccatt 1667870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 443
Target Start/End: Original strand, 16658527 - 16658575
Alignment:
Q  395 gcagtggcggaactggggggtggcaagggggagccaccaccaccccatt 443  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  16658527 gcagtggcggaactggggggtggcaagggggagacaccgccaccccatt 16658575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 447
Target Start/End: Original strand, 33360100 - 33360152
Alignment:
Q  395 gcagtggcggaactggggggtggcaagggggagccaccaccaccccattattt 447  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||    
T  33360100 gcagtggcggaattagggggtggcaagggggagccaccgccaccccattattt 33360152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 42808382 - 42808429
Alignment:
Q  398 gtggcggaactggggggtggcaagggggagccaccaccaccccattattt 447  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  42808382 gtggcggaactggggggtggca--ggggagccaccgccaccccattattt 42808429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 442
Target Start/End: Original strand, 32381211 - 32381243
Alignment:
Q  410 gggggtggcaagggggagccaccaccaccccat 442  Q
    ||||||||||||||||||||||| |||||||||    
T  32381211 gggggtggcaagggggagccaccgccaccccat 32381243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 442
Target Start/End: Original strand, 32435166 - 32435198
Alignment:
Q  410 gggggtggcaagggggagccaccaccaccccat 442  Q
    ||||||||||||||||||||||| |||||||||    
T  32435166 gggggtggcaagggggagccaccgccaccccat 32435198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 42740940 - 42740888
Alignment:
Q  390 gtggtgcagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  42740940 gtggagcagtggcggaactggggggtggcaagggggagccaccgccaccccat 42740888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 395 - 442
Target Start/End: Complemental strand, 21745080 - 21745033
Alignment:
Q  395 gcagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  21745080 gcagtggcggaactggggggtggcaagggggagccaccgccaccccat 21745033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 396 - 442
Target Start/End: Original strand, 32863333 - 32863379
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  32863333 cagtggcggaactggggggtggcaagggggagccaccgccaccccat 32863379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 3173848 - 3173895
Alignment:
Q  394 tgcagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  3173848 tgcagtggcggaactgggg-gtggcaagggggagccaccgccaccccat 3173895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 26063041 - 26063089
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccatta 444  Q
    |||||||||| | |||||||||||||||||||||||| |||||||||||    
T  26063041 cagtggcggagccggggggtggcaagggggagccaccgccaccccatta 26063089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 18740081 - 18740036
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||    
T  18740081 cagtggcggaactggggt-tggcaagggggagccaccgccaccccat 18740036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 43299937 - 43299980
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccacccc 440  Q
    |||||||||||||||||  |||||||||||||||||| |||||||    
T  43299937 cagtggcggaactggggt-tggcaagggggagccaccgccacccc 43299980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 2339226 - 2339178
Alignment:
Q  395 gcagtggcggaactggggggtggcaagggggagccaccaccaccccatt 443  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2339226 gcagtggcggaactggggggtggcaagggggagccaccgccaccccatt 2339178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 9456119 - 9456161
Alignment:
Q  397 agtggcggaactggggggtggcaagggggagccaccaccaccc 439  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  9456119 agtggcggaactggggggtggcaagggggagccaccgccaccc 9456161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 396 - 442
Target Start/End: Original strand, 52893141 - 52893187
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||    
T  52893141 cagtggcggaactgggggttggcaagggggagccaccgccaccccat 52893187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 40922552 - 40922600
Alignment:
Q  400 ggcggaactggggggtggcaagggggagccaccaccaccccattattta 448  Q
    ||||||||  ||||||||||||||||||||||| |||||||||| ||||    
T  40922552 ggcggaaccagggggtggcaagggggagccaccgccaccccatttttta 40922600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 39323 - 39375
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccattattta 448  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  39323 cagtggcggaactagggggtggcaagggggagccacagccaccccattattta 39375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 14800404 - 14800352
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccattattta 448  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  14800404 cagtggcggaactagggggtggcaagggggagccacagccaccccattattta 14800352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 33754363 - 33754312
Alignment:
Q  393 gtgcagtggcggaactggggggtggcaagggggagccaccaccaccccatta 444  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  33754363 gtgcggtggcagaactggggggtggcaagggggagccaccgccaccccatta 33754312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 447
Target Start/End: Original strand, 21421920 - 21421970
Alignment:
Q  397 agtggcggaactggggggtggcaagggggagccaccaccaccccattattt 447  Q
    ||||||||| |  ||||||||||||||||||||||| ||||||||||||||    
T  21421920 agtggcggagccagggggtggcaagggggagccaccgccaccccattattt 21421970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 46164797 - 46164751
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    |||||||||||||||| |||||||||||||||||||| |||| ||||    
T  46164797 cagtggcggaactgggtggtggcaagggggagccaccgccactccat 46164751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 44504331 - 44504379
Alignment:
Q  394 tgcagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    ||||| ||||||||| |||| |||||||||||||||||| |||||||||    
T  44504331 tgcaggggcggaactaggggttggcaagggggagccaccgccaccccat 44504379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 8433416 - 8433371
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    |||||||||||| ||||| |||||||||||||||||| |||||||||    
T  8433416 cagtggcggaaccggggg-tggcaagggggagccaccgccaccccat 8433371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 444
Target Start/End: Original strand, 20037990 - 20038023
Alignment:
Q  411 ggggtggcaagggggagccaccaccaccccatta 444  Q
    ||||||||||||||||||||||||| ||||||||    
T  20037990 ggggtggcaagggggagccaccacctccccatta 20038023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 54785622 - 54785574
Alignment:
Q  396 cagtggcggaactggggggtggcaaggggga--gccaccaccaccccat 442  Q
    |||||||||||||||||||||| ||||||||  |||||| |||||||||    
T  54785622 cagtggcggaactggggggtgggaagggggagcgccaccgccaccccat 54785574  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 38979032 - 38978988
Alignment:
Q  394 tgcagtggcggaactggggggtggcaagggggagccaccaccacc 438  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  38979032 tgcagtgacggaactggggggtggcaagggggagccaccaccacc 38978988  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 16497606 - 16497560
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||    
T  16497606 cagtggcggaactgcggggtggcaagggggagccaccgccaccccat 16497560  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 448
Target Start/End: Original strand, 7170715 - 7170768
Alignment:
Q  395 gcagtggcggaactggggggtggcaagggggagccaccaccaccccattattta 448  Q
    ||||| |||||||  ||||||||||||||||||||||| |||||||||||||||    
T  7170715 gcagttgcggaaccagggggtggcaagggggagccaccgccaccccattattta 7170768  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 442
Target Start/End: Complemental strand, 14125143 - 14125098
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    |||||||||||||||||| |||||||||||||||||| | |||||||    
T  14125143 cagtggcggaactggggg-tggcaagggggagccaccgctaccccat 14125098  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 26014217 - 26014261
Alignment:
Q  398 gtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  26014217 gtggcggaattggggggtggcaagggggagccaccgccaccccat 26014261  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 444
Target Start/End: Complemental strand, 18994673 - 18994625
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccatta 444  Q
    |||||||||| |  ||||||||||||||||||||||| |||||||||||    
T  18994673 cagtggcggagccagggggtggcaagggggagccaccgccaccccatta 18994625  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 442
Target Start/End: Original strand, 26354696 - 26354741
Alignment:
Q  396 cagtggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||    
T  26354696 cagtggcggaactggagg-tggcaagggggagccaccgccaccccat 26354741  T

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Target: scaffold1160 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 442
Target Start/End: Original strand, 2168 - 2211
Alignment:
Q  399 tggcggaactggggggtggcaagggggagccaccaccaccccat 442  Q
    |||||||||| |||||||| |||||||||||||| |||||||||    
T  2168 tggcggaactagggggtggtaagggggagccaccgccaccccat 2211  T

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