View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_high_6 (Length: 569)
Name: NF14917_high_6
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 11 - 553
Target Start/End: Complemental strand, 45681502 - 45680961
Alignment:
| Q |
11 |
cataggacaacgaagccgacatatattataggcatatatatacagcaagagcaatggagcattacattttttgttctgtcaataaaatacaagttacatt |
110 |
Q |
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| T |
45681502 |
cataggacaacgaagccgatatatattataggcatatatatacagcaagagcaatggagcattacattttttgttctgtcaataaaatacaagttacatt |
45681403 |
T |
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| Q |
111 |
tctattttaatatttggagtttgacttagctgaacaactcatatgggattgggaagt--ataagataagataagggtatgtattatggagattagaattt |
208 |
Q |
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| T |
45681402 |
tttattttaatatttggagtttgacttagctgaacaactcatatgggattgggaagtgtataagataagataagggtatgtattatggagattagaattt |
45681303 |
T |
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| Q |
209 |
tagaagcatctttctaatgagaatttaaatataattccaacgtccaattgaatgtccgaattaggacataacttaactccccggaagctcataatgtcag |
308 |
Q |
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| T |
45681302 |
tagaagcatctttctaatgagaatttaaatataattccaacgtccaattggatgtctgaattaggacataacttaagtccccggaagctcataatgtcag |
45681203 |
T |
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| Q |
309 |
aacaaacaggcaatcaaagnnnnnnntatttcaatagtatataaatttaatataatatttttaacnnnnnnnnnggtgttatatattgagaggagagaag |
408 |
Q |
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| T |
45681202 |
aacaaacaggcaatcaaag---aaaatatttcaatagtatataaatttaatataatatttttaacaaaaaaaaaagtgttatatattgagacgagagaag |
45681106 |
T |
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| Q |
409 |
atactttgagtttagaacatgttaatgaaaaaacaaagcacttggagacaaattactattttggcagtttctgtgtcatgaataactcgcagggaatatt |
508 |
Q |
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| T |
45681105 |
atactttgagtttagaacatgttaatgaaaaaacaaagcacttggagacaaattactattttggcagtttctgtgtcatgaataactcgcagggaatatt |
45681006 |
T |
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| Q |
509 |
gtacaatttgtgccatctcagaaagacaaatgaaaagtttaattt |
553 |
Q |
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| T |
45681005 |
gtacaatttgtgccatctcagaaagacaaatgaaaagtttaattt |
45680961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 474
Target Start/End: Original strand, 1268022 - 1268051
Alignment:
| Q |
445 |
agcacttggagacaaattactattttggca |
474 |
Q |
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| T |
1268022 |
agcacttggagacaaattactattttggca |
1268051 |
T |
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