View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14917_high_8 (Length: 471)

Name: NF14917_high_8
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14917_high_8
NF14917_high_8
[»] chr5 (3 HSPs)
chr5 (165-435)||(39735517-39735787)
chr5 (17-167)||(39735310-39735460)
chr5 (165-210)||(39848186-39848231)
[»] chr7 (4 HSPs)
chr7 (105-158)||(33872788-33872841)
chr7 (105-165)||(7913828-7913887)
chr7 (104-154)||(43735741-43735791)
chr7 (104-165)||(37829974-37830034)
[»] chr4 (2 HSPs)
chr4 (109-154)||(17079994-17080038)
chr4 (105-165)||(6478447-6478507)
[»] chr2 (2 HSPs)
chr2 (104-165)||(41508139-41508199)
chr2 (105-155)||(25726934-25726983)
[»] chr1 (4 HSPs)
chr1 (105-149)||(31283791-31283835)
chr1 (108-166)||(24801788-24801847)
chr1 (110-165)||(45443435-45443490)
chr1 (109-155)||(2783561-2783606)
[»] chr8 (2 HSPs)
chr8 (104-154)||(13380475-13380524)
chr8 (113-165)||(36665240-36665291)
[»] chr3 (3 HSPs)
chr3 (111-157)||(9245943-9245989)
chr3 (104-165)||(49972713-49972773)
chr3 (105-145)||(48308090-48308129)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 165 - 435
Target Start/End: Original strand, 39735517 - 39735787
Alignment:
Q  165 atctttgactaccttctttttatttcttcaaattgtataatgtatacagggatgcatctaatatgggtctcnnnnnnngggtctaaatgtggaccatacc 264  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||    
T  39735517 atcttcgactaccttctttttatttcttcaaattgtataatgtatatagggatgcatctaatatgggtctcaaaaaaagggtctaaatgtggaccatacc 39735616  T
Q  265 atttttagtaaaacattagatctctttccnnnnnnnatattataaaatcaattatatcactaaaaacagtaagtgttcatctttgcaccttttttaatag 364  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39735617 atttttagtaaaacattagatctctttcctttttttatattataaaatcaattatattactaaaaacagtaagtgttcatctttgcaccttttttaatag 39735716  T
Q  365 gtctgtatcaatgcacaaatgtatatgcaataaatgcaagtggttttttgtatgattattttggatcgcat 435  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39735717 gtctgtatcaatgcacaaatgtatatgcagtaaatgcaagtggttttttgtatgattattttggatcgcat 39735787  T

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Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 39735310 - 39735460
Alignment:
Q  17 cattttacaccaacagttaattctatgtgtttgctttgtttgtctttatcgttattttttccatccttggctacctttaannnnnnngaatgacaaatgt 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  39735310 cattttacaccaacagttaattctacgtgtttgctttgtttgtctttatcgttattttttccatccttggctacctttaatttttttgaatgacaaatgt 39735409  T
Q  117 tagtagttagttcgttatattaatatttactcatttgttcgggtttgaatc 167  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39735410 tagtagttagtttgttatattaatatttactcatttgttcgggtttgaatc 39735460  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 39848231 - 39848186
Alignment:
Q  165 atctttgactaccttctttttatttcttcaaattgtataatgtata 210  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||    
T  39848231 atctttgacttccttctttttatttctttaaattttataatgtata 39848186  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 33872788 - 33872841
Alignment:
Q  105 aatgacaaatgttagtagttagttcgttatattaatatttactcatttgttcgg 158  Q
    |||| ||||||||||||||||||| |||| ||||||||||| || |||||||||    
T  33872788 aatggcaaatgttagtagttagtttgttagattaatatttagtcctttgttcgg 33872841  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 7913828 - 7913887
Alignment:
Q  105 aatgacaaatgttagtagttagttcgttatattaatatttactcatttgttcgggtttgaa 165  Q
    |||| ||||||||||||||||||| |||||||||||||||||||  ||| ||| |||||||    
T  7913828 aatggcaaatgttagtagttagtt-gttatattaatatttactctcttgctcgagtttgaa 7913887  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 43735741 - 43735791
Alignment:
Q  104 gaatgacaaatgttagtagttagttcgttatattaatatttactcatttgt 154  Q
    ||||| ||||||||||||| ||||| |||| |||||||||||||| |||||    
T  43735741 gaatggcaaatgttagtagctagtttgttagattaatatttactcctttgt 43735791  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 37830034 - 37829974
Alignment:
Q  104 gaatgacaaatgttagtagttagttcgttatattaatatttactcatttgttcgggtttgaa 165  Q
    |||||||||||||||||| |||||| |||| |||||||| ||||| || || ||||||||||    
T  37830034 gaatgacaaatgttagtaattagtt-gttagattaatatctactccttcgtccgggtttgaa 37829974  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 17080038 - 17079994
Alignment:
Q  109 acaaatgttagtagttagttcgttatattaatatttactcatttgt 154  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||    
T  17080038 acaaatgttagtagttagtt-gttacattaatatttactcatttgt 17079994  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 6478507 - 6478447
Alignment:
Q  105 aatgacaaatgttagtagttagttcgttatattaatatttactcatttgttcgggtttgaa 165  Q
    |||| ||||| ||||||||||||| |||| |||||||||| ||| ||||| ||||||||||    
T  6478507 aatggcaaatattagtagttagtttgttagattaatattttctcctttgtccgggtttgaa 6478447  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 41508139 - 41508199
Alignment:
Q  104 gaatgacaaatgttagtagttagttcgttatattaatatttactcatttgttcgggtttgaa 165  Q
    |||||||||||||||| | |||||| ||||||||||||||||||| || || ||||||||||    
T  41508139 gaatgacaaatgttagcaattagtt-gttatattaatatttactccttcgtccgggtttgaa 41508199  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 25726934 - 25726983
Alignment:
Q  105 aatgacaaatgttagtagttagttcgttatattaatatttactcatttgtt 155  Q
    ||||| ||||||||||||||| || |||| |||||||||||||||||||||    
T  25726934 aatgaaaaatgttagtagttaatt-gttagattaatatttactcatttgtt 25726983  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 31283835 - 31283791
Alignment:
Q  105 aatgacaaatgttagtagttagttcgttatattaatatttactca 149  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||    
T  31283835 aatgacaaatattagtagttagtttgttagattaatatttactca 31283791  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 24801847 - 24801788
Alignment:
Q  108 gacaaatgttagtagttagttcgttatattaatattt-actcatttgttcgggtttgaat 166  Q
    |||||||||||||||||||||  ||| |||||| ||| |||| |||||||||||||||||    
T  24801847 gacaaatgttagtagttagtttattagattaatttttgactcttttgttcgggtttgaat 24801788  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 45443435 - 45443490
Alignment:
Q  110 caaatgttagtagttagttcgttatattaatatttactcatttgttcgggtttgaa 165  Q
    |||||||||||| |||||| |||| |||||||||||||| || || ||||||||||    
T  45443435 caaatgttagtaattagtttgttagattaatatttactccttcgtccgggtttgaa 45443490  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 2783606 - 2783561
Alignment:
Q  109 acaaatgttagtagttagttcgttatattaatatttactcatttgtt 155  Q
    ||||||||||||||||| || |||| |||||||||||||||||||||    
T  2783606 acaaatgttagtagttattt-gttagattaatatttactcatttgtt 2783561  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 13380524 - 13380475
Alignment:
Q  104 gaatgacaaatgttagtagttagttcgttatattaatatttactcatttgt 154  Q
    |||||||||||| |||||||||||| |||| |||||||||||||| |||||    
T  13380524 gaatgacaaatgctagtagttagtt-gttagattaatatttactcttttgt 13380475  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 36665240 - 36665291
Alignment:
Q  113 atgttagtagttagttcgttatattaatatttactcatttgttcgggtttgaa 165  Q
    |||||||||||||||| |||| ||||||||||| || ||||| ||||||||||    
T  36665240 atgttagtagttagtt-gttagattaatatttattcctttgtccgggtttgaa 36665291  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 9245989 - 9245943
Alignment:
Q  111 aaatgttagtagttagttcgttatattaatatttactcatttgttcg 157  Q
    |||||||||||||||||| |||| ||||||||| ||| |||||||||    
T  9245989 aaatgttagtagttagtttgttagattaatattaacttatttgttcg 9245943  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 49972773 - 49972713
Alignment:
Q  104 gaatgacaaatgttagtagttagttcgttatattaatatttactcatttgttcgggtttgaa 165  Q
    |||||| ||||||||||| |||||| ||||||||||| ||||||||||| | || |||||||    
T  49972773 gaatgaaaaatgttagtaattagtt-gttatattaatctttactcatttatccgagtttgaa 49972713  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 48308090 - 48308129
Alignment:
Q  105 aatgacaaatgttagtagttagttcgttatattaatattta 145  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  48308090 aatgacaaatgttagtagttagtt-gttagattaatattta 48308129  T

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