View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14917_high_9 (Length: 458)
Name: NF14917_high_9
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 45896382 - 45896120
Alignment:
| Q |
8 |
agattatacttgaaaataattagcagctccaaatcactagtatttaagccaccacaccacatttggccctcattacatcagcgataagcaacataatttt |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45896382 |
agataatacttgaaaataattagcagctccaaatcactagtatttaagccaccacaccacatttggccctcattacatcagcgataagcaacataattta |
45896283 |
T |
|
| Q |
108 |
atatttttt-gaaataataagcaacataaaatacagtgaaaacttttcaagtttataattacatagcaaatgtccaaacacacgtcacactaacatatag |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
45896282 |
atatttttttgaaataataagcaacataaaatacagtgaaaacttttcaagtttataattacatagcaaatgtccaaacacacgtcatactgacatatag |
45896183 |
T |
|
| Q |
207 |
tgttcctcaaatgtcagaagcaaatgtccaaacaacagtagcaacaccatccagcacaactgc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45896182 |
tgttcctcaaatgtcagaagcaaatgtccaaacaacagtagcaacaccatccagcacaactgc |
45896120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University