View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14917_low_1 (Length: 708)
Name: NF14917_low_1
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_1 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 314 - 656
Target Start/End: Complemental strand, 54546200 - 54545858
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaa |
413 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
54546200 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatatttacgtggaaacccctcaacaa |
54546101 |
T |
|
| Q |
414 |
ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactc |
513 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54546100 |
ataaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactc |
54546001 |
T |
|
| Q |
514 |
tctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctac |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54546000 |
tctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctac |
54545901 |
T |
|
| Q |
614 |
taagaacaagtagttgttgtgttactttgttatgtgatggtgt |
656 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54545900 |
taagaacaagtagttgttgtgttactttgttctgtgatggtgt |
54545858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 314 - 608
Target Start/End: Original strand, 5823275 - 5823568
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5823275 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
5823374 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823375 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact |
5823474 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
5823475 |
ctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
5823568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 314 - 608
Target Start/End: Original strand, 5818513 - 5818806
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5818513 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact |
5818612 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818613 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact |
5818712 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
5818713 |
ctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
5818806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 314 - 535
Target Start/End: Original strand, 2817263 - 2817486
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2817263 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
2817362 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattacca-- |
510 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||| || |||||||||| ||||||||||||||||| |||| |
|
|
| T |
2817363 |
aataa-gggaaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccact |
2817461 |
T |
|
| Q |
511 |
ctctctcttataaataggagaatac |
535 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2817462 |
ctctctcttataaataggagaatac |
2817486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 314 - 464
Target Start/End: Original strand, 24659136 - 24659285
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
24659136 |
tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca |
24659235 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24659236 |
aataaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaa |
24659285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 328 - 483
Target Start/End: Original strand, 31204781 - 31204936
Alignment:
| Q |
328 |
gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaaa |
427 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31204781 |
gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatatttacgtggaaacccctcaacaaataagaggaaaaaa |
31204879 |
T |
|
| Q |
428 |
ccacgg-ggcaagagtagagaactttcactaagtggaaaaaattacaggacctctct |
483 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
31204880 |
tcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaacctctct |
31204936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 324 - 427
Target Start/End: Complemental strand, 4579358 - 4579254
Alignment:
| Q |
324 |
cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataagggga |
422 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4579358 |
cagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga |
4579259 |
T |
|
| Q |
423 |
aaaaa |
427 |
Q |
| |
|
||||| |
|
|
| T |
4579258 |
aaaaa |
4579254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 352 - 508
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
| Q |
352 |
aaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaact |
450 |
Q |
| |
|
|||||||||| |||||||||| || |||||| ||||||||||||| ||| || |||||| ||| |||||||| ||| |||||||||| | || | |
|
|
| T |
35977258 |
aaaataagaggtgagaaaagagaaattgaacaaacaatatttacgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagtt |
35977161 |
T |
|
| Q |
451 |
ttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattac |
508 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
35977160 |
ttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac |
35977103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 606
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
| Q |
466 |
aaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctca |
565 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
24671173 |
aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaacacta----------ggagaaacctca |
24671260 |
T |
|
| Q |
566 |
caggagaaactaatttttctctctatatttttcctctcact |
606 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
24671261 |
caggagaaactatatttcctctctatatttttcctctcact |
24671301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 555 - 606
Target Start/End: Complemental strand, 4579177 - 4579126
Alignment:
| Q |
555 |
gagaaacctcacaggagaaactaatttttctctctatatttttcctctcact |
606 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
4579177 |
gagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
4579126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 36420220 - 36420132
Alignment:
| Q |
328 |
gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaata |
416 |
Q |
| |
|
||||||||||||||||| | || ||||||| |||| ||||||| | |||| ||||| |||||||||||||||| | |||||||||| |
|
|
| T |
36420220 |
gtaacaaaatattatcatgtagttaaaatatgagatgagaaaaaaagaacaacacacataatatttacgtggaaatctttcaacaaata |
36420132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 314 - 644
Target Start/End: Original strand, 27878709 - 27879040
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27878709 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
27878808 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27878809 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
27878908 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27878909 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattcta |
27879008 |
T |
|
| Q |
613 |
ctaagaacaagtagttgttgtgttactttgtt |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27879009 |
ctaagaacaagtagttgttgtgttactttgtt |
27879040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 313 - 608
Target Start/End: Complemental strand, 1235019 - 1234725
Alignment:
| Q |
313 |
ttgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaac |
411 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1235019 |
ttgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
1234920 |
T |
|
| Q |
412 |
aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccac |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1234919 |
aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
1234820 |
T |
|
| Q |
512 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
1234819 |
tctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
1234725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 314 - 608
Target Start/End: Original strand, 26976131 - 26976424
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26976131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
26976230 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976231 |
aataaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact |
26976330 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
26976331 |
ctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
26976424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 314 - 608
Target Start/End: Original strand, 27873990 - 27874283
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27873990 |
tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
27874089 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27874090 |
aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
27874189 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||| |
|
|
| T |
27874190 |
ctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat |
27874283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 360 - 708
Target Start/End: Complemental strand, 30966923 - 30966574
Alignment:
| Q |
360 |
agacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcactaa |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||| |
|
|
| T |
30966923 |
agacgagaaaagaggaactgaacacacaatatttacgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcactaa |
30966824 |
T |
|
| Q |
459 |
gtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggaga |
558 |
Q |
| |
|
|||||| ||||| ||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||| ||| | |||||||||||| |
|
|
| T |
30966823 |
gtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat------actgaggctacctaggaga |
30966730 |
T |
|
| Q |
559 |
aacctcac-aggagaaactaatt-tttctctctatatttttcctctcactattctacta-agaaca----agtagttgttgtgttactttgttatgtgat |
651 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||||||||| ||||| | ||||||| |||||| | | | ||||||||||||||||| |||||| |
|
|
| T |
30966729 |
aacctcacaagtagaaactatttctttctctctatattttttctctc-taactctactatagaacaaaacacttgctgttgtgttactttgttctgtgat |
30966631 |
T |
|
| Q |
652 |
ggtgtatagaacaatggtacaagagcatgctatttatactggtgaaagagccatgcc |
708 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30966630 |
ggtgtgaggaacaatggtacaagagcatgctatttatactagtgaaagagccatgcc |
30966574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 314 - 708
Target Start/End: Complemental strand, 30986829 - 30986447
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaa---cccctcaa |
410 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
30986829 |
tgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatatttacgtggaaagtacccctcaa |
30986730 |
T |
|
| Q |
411 |
caaataaggggaaaaaa--ccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattac |
508 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||||| |
|
|
| T |
30986729 |
caaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattac |
30986630 |
T |
|
| Q |
509 |
cactctctcttataaataggagaatacaaacactaacactacctaggagaaacctca-caggagaaactaatttttctctctatatttttcctctcacta |
607 |
Q |
| |
|
||||||||||| ||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| ||||| ||| |||| ||| |
|
|
| T |
30986629 |
cactctctcttgtaaatagaagaat------actgacactacctaggagaaacctcatgaggagaaacta---tttctttct---------ctctaactc |
30986548 |
T |
|
| Q |
608 |
ttctactaagaacaagtagttgttgtgttactttgttatgtgatggtgtatagaacaatggtacaagagcatgctatttatactggtgaaagagccatgc |
707 |
Q |
| |
|
| ||| | || | | ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
30986547 |
tactagaacaaaacacttgttgttgtgttactttgttctgtgatggtgtgagtaacaatagtacaagagcatgctatttatattagtgaaagagccatgc |
30986448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 314 - 606
Target Start/End: Complemental strand, 18968194 - 18967912
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
18968194 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca |
18968095 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa-aaaattacaggacctctctctaactacaaggagagtacaattaccac |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||| ||||||||| ||||||||||| ||||| | | |
|
|
| T |
18968094 |
aataaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-c |
18967996 |
T |
|
| Q |
512 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact |
606 |
Q |
| |
|
|||||| | |||||||||||||| |||| ||||||||||||||||| ||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
18967995 |
tctctcat-gaaataggagaatactaaca----------ctaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact |
18967912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 29736777 - 29736614
Alignment:
| Q |
22 |
tttagaagcttgtgtaactttttcttgttcttcaagtgcctccccaattctcagcaccactgctctagtactctcgacttcggcacaagcaaaagacttc |
121 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |||||| |||||||||||||||||||| | |
|
|
| T |
29736777 |
tttagaagcttgtgtaactttttctt---cttcaagtgcctccccaaatctcagcaccactgctctagcattctcgatttcggcacaagcaaaagactgc |
29736681 |
T |
|
| Q |
122 |
tcttgattaaccaaccttttagcatattcagaagcctatagaacaaaaatggaatcaaatttctttt |
188 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
29736680 |
tcttgattaaccaactttttagcatcttcagaagcctatagcacaaagatggaatcacatttctttt |
29736614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 327 - 504
Target Start/End: Complemental strand, 21966852 - 21966677
Alignment:
| Q |
327 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaa |
426 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | |||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
21966852 |
agtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatatttatgtggaaacccctcaataaataaagggaaaaa |
21966754 |
T |
|
| Q |
427 |
accacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaa |
504 |
Q |
| |
|
| | ||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||| | ||| |||||||||| |
|
|
| T |
21966753 |
tc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa |
21966677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 313 - 461
Target Start/End: Original strand, 23012499 - 23012647
Alignment:
| Q |
313 |
ttgttaggtaacagagtaacaaaa-tattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatatttacgtggaaacccctcaa |
410 |
Q |
| |
|
||||| ||||||| ||||| |||| |||||||||||| ||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| | || | |
|
|
| T |
23012499 |
ttgttgggtaacaaagtaaaaaaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacattatttacgtggaaactcgtc-a |
23012597 |
T |
|
| Q |
411 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtg |
461 |
Q |
| |
|
||||| | ||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23012598 |
caaattaaggggaaaaacca-tgggcaagagtagagaactttcactaagtg |
23012647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 30967725 - 30967674
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacga |
365 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30967725 |
tgttaggtaccagagtaacaaaatattatcaagcagctaaaataagagacga |
30967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 314 - 644
Target Start/End: Original strand, 30945477 - 30945807
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30945477 |
tgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
30945576 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30945577 |
aataaggg-aaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccact |
30945675 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30945676 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattcta |
30945775 |
T |
|
| Q |
613 |
ctaagaacaagtagttgttgtgttactttgtt |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
30945776 |
ctaagaacaagtagttgttgtgttactttgtt |
30945807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 314 - 647
Target Start/End: Original strand, 30950183 - 30950516
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30950183 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
30950282 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
30950283 |
aataaggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccact |
30950381 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30950382 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattcta |
30950481 |
T |
|
| Q |
613 |
ctaagaacaagtagttgttgtgttactttgttatg |
647 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950482 |
ctaagaacaagtagttgttgtgttactttgttatg |
30950516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 314 - 608
Target Start/End: Original strand, 48701821 - 48702114
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48701821 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
48701920 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48701921 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
48702020 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
48702021 |
ctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
48702114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 314 - 608
Target Start/End: Complemental strand, 42266220 - 42265927
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42266220 |
tgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
42266121 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42266120 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
42266021 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||| |
|
|
| T |
42266020 |
ctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat |
42265927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 314 - 608
Target Start/End: Complemental strand, 42270939 - 42270646
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42270939 |
tgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
42270840 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42270839 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
42270740 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||| |
|
|
| T |
42270739 |
ctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactat |
42270646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 324 - 608
Target Start/End: Original strand, 24520035 - 24520318
Alignment:
| Q |
324 |
cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacaaataagggga |
422 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24520035 |
cagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga |
24520134 |
T |
|
| Q |
423 |
aaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttata |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520135 |
aaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttata |
24520234 |
T |
|
| Q |
523 |
aataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
24520235 |
aataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
24520318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 313 - 608
Target Start/End: Original strand, 48697130 - 48697425
Alignment:
| Q |
313 |
ttgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaac |
411 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48697130 |
ttgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
48697229 |
T |
|
| Q |
412 |
aaataaggggaaaa-aaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattacca |
510 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48697230 |
aaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacca |
48697329 |
T |
|
| Q |
511 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
48697330 |
ctctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
48697425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 314 - 606
Target Start/End: Complemental strand, 10427597 - 10427315
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
10427597 |
tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca |
10427498 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa-aaaattacaggacctctctctaactacaaggagagtacaattaccac |
511 |
Q |
| |
|
|||||||||||||||| |||||| || |||||| |||||||||||||||||| | ||||||| ||| ||||||||| ||||||||||| ||||||| | |
|
|
| T |
10427497 |
aataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-c |
10427399 |
T |
|
| Q |
512 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact |
606 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
10427398 |
tctctctt-gaaataggagaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
10427315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 327 - 521
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
| Q |
327 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaa |
426 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
48783031 |
agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatatttacgtggaaatttctcaacaaataaagggaaaaa |
48782932 |
T |
|
| Q |
427 |
accacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttat |
521 |
Q |
| |
|
|| ||| ||||||||||||||||||||| |||||| | ||||||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
48782931 |
--catggg---------gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 367 - 468
Target Start/End: Complemental strand, 17248112 - 17248011
Alignment:
| Q |
367 |
aaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaa |
466 |
Q |
| |
|
||||||| |||| || ||||||||||||| |||||| |||| || |||||||||||||||||||| || ||||||| |||||||||| ||||||||||| |
|
|
| T |
17248112 |
aaaagagaaactaaatacacaatatttacatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaaaa |
17248013 |
T |
|
| Q |
467 |
aa |
468 |
Q |
| |
|
|| |
|
|
| T |
17248012 |
aa |
17248011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 437 - 545
Target Start/End: Complemental strand, 1979375 - 1979269
Alignment:
| Q |
437 |
aagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggagaataca |
536 |
Q |
| |
|
||||||||| |||||||| |||| |||| |||||||| ||||||||| || | ||||||| ||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaatact |
1979278 |
T |
|
| Q |
537 |
aacactaac |
545 |
Q |
| |
|
| ||||||| |
|
|
| T |
1979277 |
agcactaac |
1979269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 325 - 487
Target Start/End: Complemental strand, 30165968 - 30165805
Alignment:
| Q |
325 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaa |
424 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| |||||||||||| ||| ||| | ||||||| || || |
|
|
| T |
30165968 |
agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatatttacgtgaaaattccttatcaaataaaagggaa |
30165869 |
T |
|
| Q |
425 |
aaaccacggggcaagagtag-agaactttcactaagtggaaaaaattacaggacctctctctaa |
487 |
Q |
| |
|
| ||| | ||| | ||||| |||| |||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
30165868 |
tatccatgtggcgatagtagaagaattttcaccaagtgtaaaaaattacaaaccctctctctaa |
30165805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
| Q |
380 |
aacacacaatatttacgtggaaacccctcaacaaataa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1979604 |
aacacacaatatttacgtggaaacccctcaacaaataa |
1979567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 397
Target Start/End: Original strand, 36615361 - 36615442
Alignment:
| Q |
316 |
ttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgt |
397 |
Q |
| |
|
||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| ||||||||| |
|
|
| T |
36615361 |
ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattatttacgt |
36615442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 271
Target Start/End: Original strand, 44562748 - 44562808
Alignment:
| Q |
211 |
aactaattataccttaaccactaaacaccactaatctttggtttaggttgtttagacactt |
271 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||||| || | |||||||||||||| |
|
|
| T |
44562748 |
aactaattagaacttaatcactaaacaccactaatctttgtttcggattgtttagacactt |
44562808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 287; Significance: 1e-160; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 25287793 - 25288095
Alignment:
| Q |
11 |
agaacctgtggtttagaagcttgtgtaactttttcttgttcttcaagtgcctccccaattctcagcaccactgctctagtactctcgacttcggcacaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25287793 |
agaacctgtggtttagaagcttgtgtatctttttcttgttcttcaagtgcctccccaattctcagcaccactgctctagtactctcgacttcagcacaag |
25287892 |
T |
|
| Q |
111 |
caaaagacttctcttgattaaccaaccttttagcatattcagaagcctatagaacaaaaatggaatcaaatttcttttccatcaaaagtgctgcaacaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25287893 |
caaaagacttctcttgattaaccaaccttttagcatattcagaagcctatagaacaaaaatggaatcaaatttcttttccatcaaaagtgctacaacaat |
25287992 |
T |
|
| Q |
211 |
aactaattataccttaaccactaaacaccactaatctttggtttaggttgtttagacacttgatccctatgtacctataacacaatacaaagtaacctaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25287993 |
aactaattataccttaaccactaaacaccactaatctttggtttaggttgtttagacacttgatccctttgtacctataacacaatacaaagtaacctaa |
25288092 |
T |
|
| Q |
311 |
att |
313 |
Q |
| |
|
||| |
|
|
| T |
25288093 |
att |
25288095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 324 - 608
Target Start/End: Original strand, 5198665 - 5198948
Alignment:
| Q |
324 |
cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacaaataagggga |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5198665 |
cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga |
5198764 |
T |
|
| Q |
423 |
aaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttata |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5198765 |
aaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttata |
5198864 |
T |
|
| Q |
523 |
aataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
5198865 |
aataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
5198948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 325 - 604
Target Start/End: Complemental strand, 15603183 - 15602905
Alignment:
| Q |
325 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacaaataaggggaa |
423 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15603183 |
agagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa |
15603084 |
T |
|
| Q |
424 |
aaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataa |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||| | || |||| |||||||||||| ||| |||| ||| |
|
|
| T |
15603083 |
aaaaccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaa |
15602984 |
T |
|
| Q |
524 |
ataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctca |
604 |
Q |
| |
|
|||||||||||| | ||||||||| ||| ||||||||||| || | || ||||||||||| |||||||||||||||||| |
|
|
| T |
15602983 |
ataggagaatacta--actaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca |
15602905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 314 - 476
Target Start/End: Complemental strand, 825796 - 825632
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
825796 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaaca |
825697 |
T |
|
| Q |
413 |
aataagggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacagga |
476 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
825696 |
aataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 313 - 476
Target Start/End: Complemental strand, 830453 - 830288
Alignment:
| Q |
313 |
ttgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaac |
411 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
830453 |
ttgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
830354 |
T |
|
| Q |
412 |
aaataagggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacagga |
476 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
830353 |
aaataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 324 - 582
Target Start/End: Complemental strand, 28716067 - 28715816
Alignment:
| Q |
324 |
cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaa |
423 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28716067 |
cagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatatttacgtggaaacccctcattaaataagggga- |
28715969 |
T |
|
| Q |
424 |
aaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataa |
523 |
Q |
| |
|
|||||||| | |||| |||||||||||||| |||||||| |||||||||||| ||||||||| | ||||||||||||||||||||| | || ||||| |
|
|
| T |
28715968 |
aaaaccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctataa |
28715869 |
T |
|
| Q |
524 |
ataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttt |
582 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
28715868 |
ataggagaat------actaacactacctaggagaaaccttacaagagaaactattttt |
28715816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 526 - 641
Target Start/End: Complemental strand, 830291 - 830176
Alignment:
| Q |
526 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta |
830192 |
T |
|
| Q |
626 |
gttgttgtgttacttt |
641 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
830191 |
gttgttgtgttacttt |
830176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 324 - 606
Target Start/End: Original strand, 30396921 - 30397191
Alignment:
| Q |
324 |
cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaa |
423 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||||| || |
|
|
| T |
30396921 |
cagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atattttcgttgaaacccctcaacaaataagggaaa |
30397019 |
T |
|
| Q |
424 |
aaaaccacggggcaagagtagagaac-tttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttata |
522 |
Q |
| |
|
|||| ||| |||| |||||||||||| ||||||||||||||| |||||||| ||||||| |||| ||||||||||| ||||||| |||| | || | |
|
|
| T |
30397020 |
aaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctatgtt-ga |
30397117 |
T |
|
| Q |
523 |
aataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact |
606 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
30397118 |
aataggagaatattaaca----------ctaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact |
30397191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 526 - 641
Target Start/End: Complemental strand, 825635 - 825520
Alignment:
| Q |
526 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta |
625 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattctactaagaacaagta |
825536 |
T |
|
| Q |
626 |
gttgttgtgttacttt |
641 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
825535 |
gttgttgtgttacttt |
825520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 314 - 535
Target Start/End: Original strand, 13840240 - 13840456
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaa |
413 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||| | || ||||| ||| |||||| ||||||| ||||||| |||||||| || || ||||||||| |
|
|
| T |
13840240 |
tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atatttacatgagaattcctcaacaa |
13840337 |
T |
|
| Q |
414 |
ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactc |
513 |
Q |
| |
|
| |||||| |||| || || ||||||||||| || ||| || |||| ||||||||||| |||||||||||| || ||||||||||||||||| | || |
|
|
| T |
13840338 |
acaagggggaaaa--catggagcaagagtagaaaatttttaccaagta-aaaaaattacaaaacctctctctaaatataaggagagtacaattacaattc |
13840434 |
T |
|
| Q |
514 |
tctcttataaataggagaatac |
535 |
Q |
| |
|
||||||| ||||| ||||||| |
|
|
| T |
13840435 |
tctcttaaaaataaaagaatac |
13840456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 383 - 533
Target Start/End: Original strand, 13843865 - 13844014
Alignment:
| Q |
383 |
acacaatatttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctc |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||| | || || |||| |||| ||||| ||||||||| ||||||||||||| || |
|
|
| T |
13843865 |
acacaatatttacgtggaaacccctcaacaaataaggag-aaaaattataggttaaaagtatagaattttcattaagtggaagaaattacaggacccctt |
13843963 |
T |
|
| Q |
483 |
tctaactacaaggagagtacaattaccactctctcttataaataggagaat |
533 |
Q |
| |
|
| ||| |||||| ||| || |||||||||||| | ||| |||||||||||| |
|
|
| T |
13843964 |
tataaatacaagaagaataaaattaccactctattttaaaaataggagaat |
13844014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 314 - 458
Target Start/End: Original strand, 31592910 - 31593053
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat-atttacgtggaaacccctcaaca |
412 |
Q |
| |
|
|||| |||| || ||||||| ||||||||||| ||| || |||||||||||||||||||||||| |||| ||||| ||||||||||||| | ||||| | |
|
|
| T |
31592910 |
tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata |
31593009 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaa |
458 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||||||||| |
|
|
| T |
31593010 |
aataa-gaaaaaaaaccac-agataagagtagagaactttcactaa |
31593053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 408 - 541
Target Start/End: Complemental strand, 8004292 - 8004161
Alignment:
| Q |
408 |
caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaatta |
507 |
Q |
| |
|
||||||||||| ||||||| | |||||| | || |||| |||||||||| | ||||| |||||| | |||||||| ||| | ||| |||||||||||| |
|
|
| T |
8004292 |
caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta |
8004194 |
T |
|
| Q |
508 |
ccactctctcttataaataggagaatacaaacac |
541 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||| |
|
|
| T |
8004193 |
c-actctctcttataaataggagaatactaacac |
8004161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 334 - 448
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
| Q |
334 |
aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaaaccacgg |
433 |
Q |
| |
|
||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||| |||||||| ||||| |||||| ||||||||| | | |
|
|
| T |
12175768 |
aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttttgtggaaacatctcaataaataa-tggaaaaaacaattg |
12175866 |
T |
|
| Q |
434 |
ggcaagagtagagaa |
448 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
12175867 |
gacaagagtagagaa |
12175881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 375 - 454
Target Start/End: Complemental strand, 42117876 - 42117798
Alignment:
| Q |
375 |
aactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttca |
454 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||||| |||||||||| ||||||||| | ||| |||||| |||||||| |
|
|
| T |
42117876 |
aactgaacatacaatatttacgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttca |
42117798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
| Q |
329 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact |
378 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||||||||||| ||||| |
|
|
| T |
9358158 |
taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact |
9358207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 307 - 608
Target Start/End: Complemental strand, 34360280 - 34359980
Alignment:
| Q |
307 |
ctaaatttgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaaccc |
405 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
34360280 |
ctaaatttgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaaccc |
34360181 |
T |
|
| Q |
406 |
ctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaat |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360180 |
ctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaat |
34360081 |
T |
|
| Q |
506 |
taccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcac |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34360080 |
taccactctctcttataaataggagaatacta--actaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcac |
34359983 |
T |
|
| Q |
606 |
tat |
608 |
Q |
| |
|
||| |
|
|
| T |
34359982 |
tat |
34359980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 314 - 612
Target Start/End: Original strand, 29585300 - 29585597
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29585300 |
tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
29585399 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29585400 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccact |
29585499 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta |
612 |
Q |
| |
|
||||||||||||||||||||||| | ||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29585500 |
ctctcttataaataggagaatacta--actaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactcta |
29585597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 314 - 608
Target Start/End: Complemental strand, 41718727 - 41718434
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41718727 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
41718628 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41718627 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
41718528 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
41718527 |
ctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
41718434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 314 - 608
Target Start/End: Complemental strand, 41723453 - 41723160
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41723453 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
41723354 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41723353 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
41723254 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
41723253 |
ctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
41723160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 333 - 608
Target Start/End: Complemental strand, 34352546 - 34352272
Alignment:
| Q |
333 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacaaataaggggaaaaaaccac |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352546 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
34352447 |
T |
|
| Q |
432 |
ggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352446 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga |
34352347 |
T |
|
| Q |
532 |
atacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
|||| | |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34352346 |
atacta--actaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactat |
34352272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 479
Target Start/End: Complemental strand, 6768501 - 6768370
Alignment:
| Q |
351 |
taaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataagggga---aaaaaccacggggcaagagtagaga |
447 |
Q |
| |
|
|||||||||||||| |||||||| || ||||| |||||||| || | | ||||||||||| ||||| | || ||||| ||||| ||||| |||||| |
|
|
| T |
6768501 |
taaaataagagacgggaaaagagaaattgaacgcacaatatctatgcgtaaacccctcaaataataatgagaaacaaaaatcacggaccaagaatagaga |
6768402 |
T |
|
| Q |
448 |
actttcactaagtggaaaaaattacaggacct |
479 |
Q |
| |
|
|||||||| | ||||| |||||||| ||||| |
|
|
| T |
6768401 |
actttcaccgaatggaataaattacatgacct |
6768370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 314 - 608
Target Start/End: Original strand, 9439372 - 9439665
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9439372 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
9439471 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9439472 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
9439571 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
9439572 |
ctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
9439665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 314 - 608
Target Start/End: Original strand, 9444092 - 9444385
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9444092 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
9444191 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccact |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9444192 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
9444291 |
T |
|
| Q |
513 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
608 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
9444292 |
ctctcttataaataggagaatacta--actaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactat |
9444385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 331 - 387
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
| Q |
331 |
acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca |
387 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
4799371 |
acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca |
4799315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 314 - 708
Target Start/End: Complemental strand, 30235339 - 30234942
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaa |
413 |
Q |
| |
|
|||| |||| ||||||| ||||||||||| || |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30235339 |
tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacga |
30235240 |
T |
|
| Q |
414 |
ataaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctct-ctaactacaaggagagtacaattaccac |
511 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| |||||||| ||| | ||| |||||||||||||||||| ||| || |||||||||||||||||||| |
|
|
| T |
30235239 |
ataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccac |
30235140 |
T |
|
| Q |
512 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctca-caggagaaactaatttttctctctatatttttcctctcactattc |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30235139 |
tctctcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactactc |
30235040 |
T |
|
| Q |
611 |
tactaagaacaagtagttgttgtgttactttgttatgtgatggtgtatagaacaatggtacaagagcatgctatttatactggtgaaagagccatgcc |
708 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||| | |||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
30235039 |
tattgagaacaagtagttgttgtgttactttgttctctgatgggatgagaaacaatggtacaagaacatgctatttatactagtgaaagagccatgcc |
30234942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 319 - 606
Target Start/End: Original strand, 16183636 - 16183913
Alignment:
| Q |
319 |
ggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacaaataa |
417 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16183636 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
16183735 |
T |
|
| Q |
418 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa-aaaattacaggacctctctctaactacaaggagagtacaattaccactctct |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
16183736 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctct |
16183834 |
T |
|
| Q |
517 |
cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact |
606 |
Q |
| |
|
||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
16183835 |
ctt-gaaataggagaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
16183913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 34813857 - 34814032
Alignment:
| Q |
11 |
agaacctgtggtttagaagcttgtgtaactttttcttgttcttcaagtgcctccccaattctcagcaccactgctctagtactctcgacttcggcacaag |
110 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
34813857 |
agaacctgtggtttagaagcttctgtaactttttcttgttcctcaagtgcctccccaattctcagcaccactgctctagcactctcgatttcggcacaag |
34813956 |
T |
|
| Q |
111 |
caaaagacttctcttgattaaccaaccttttagcatattcagaagcctatagaacaaaaatggaatcaaatttctt |
186 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||| ||||||| |||| |
|
|
| T |
34813957 |
caaaagacttctcttgattaaccaactttttagcatcttcagaagcctattgaacaaagatgggatcaaatatctt |
34814032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 314 - 535
Target Start/End: Original strand, 8139964 - 8140183
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaa |
413 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
8139964 |
tgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaatatttatgtggaaacccctcaacaa |
8140063 |
T |
|
| Q |
414 |
ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagagtacaattaccactc |
513 |
Q |
| |
|
||||||||| ||||||| |||| |||| |||| |||||||||| ||||||| |||||| | ||||||||||| | ||||||||||| ||||||| ||| |
|
|
| T |
8140064 |
ataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc-ctc |
8140162 |
T |
|
| Q |
514 |
tctcttataaataggagaatac |
535 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
8140163 |
tctctt-gaaataggagaatac |
8140183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 314 - 499
Target Start/End: Original strand, 8138460 - 8138645
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaa |
413 |
Q |
| |
|
|||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||| || ||| |||||||||||| ||||| |
|
|
| T |
8138460 |
tgttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaattatgtggaaaccccttaacaa |
8138559 |
T |
|
| Q |
414 |
ataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagag |
499 |
Q |
| |
|
| ||||||| ||||||||| ||||||| ||||||||||||||||| ||||| |||||||| |||||| |||||| ||||||||||| |
|
|
| T |
8138560 |
acaaggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 312 - 428
Target Start/End: Original strand, 36528413 - 36528529
Alignment:
| Q |
312 |
tttgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaac |
411 |
Q |
| |
|
|||||| |||| |||||||||||| || || ||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
36528413 |
tttgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaatatttacgtggaaacccctccac |
36528512 |
T |
|
| Q |
412 |
aaataaggggaaaaaac |
428 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
36528513 |
gaataaggaaaaaaaac |
36528529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 327 - 471
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
| Q |
327 |
agtaacaaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaa |
425 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||| ||| |||||||| ||| || ||| ||||||||| | |||| |||||||||||||||||| ||| |
|
|
| T |
5102606 |
agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatatttacat-gaaaaccctcaacaaataagggg-aaa |
5102703 |
T |
|
| Q |
426 |
aaccacggggcaagagtagagaactttcactaagtggaaaaaatta |
471 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||||||| | |||||| |
|
|
| T |
5102704 |
aaccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 164; Significance: 3e-87; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 314 - 606
Target Start/End: Original strand, 27226 - 27508
Alignment:
| Q |
314 |
tgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaaca |
412 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27226 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca |
27325 |
T |
|
| Q |
413 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa-aaaattacaggacctctctctaactacaaggagagtacaattaccac |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| || ||||||||| ||||||||||| |||||||| |
|
|
| T |
27326 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca- |
27424 |
T |
|
| Q |
512 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact |
606 |
Q |
| |
|
|||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
27425 |
tctctctt-gaaataggtgaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
27508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 4e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 309 - 606
Target Start/End: Complemental strand, 46191551 - 46191266
Alignment:
| Q |
309 |
aaatttgttaggtaacagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctc |
408 |
Q |
| |
|
|||| ||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
46191551 |
aaatgtgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacaatat-tttacgtggaaacccctc |
46191453 |
T |
|
| Q |
409 |
aacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa-aaaattacaggacctctctctaactacaaggagagtacaatta |
507 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| ||| ||||||||| || |||||||| ||||| |
|
|
| T |
46191452 |
aacaaataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaatta |
46191353 |
T |
|
| Q |
508 |
ccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcact |
606 |
Q |
| |
|
|| ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
46191352 |
cc-ctctctctt-gaaataggagaatactaaca----------ctaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
46191266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 325 - 499
Target Start/End: Original strand, 30697126 - 30697300
Alignment:
| Q |
325 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaa |
424 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30697126 |
agagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatatttacgtggaaacccctcaacaaataaggggaaa |
30697225 |
T |
|
| Q |
425 |
aaaccacggggcaagagtagagaactttcactaagtggaaaaaattacaggacctctctctaactacaaggagag |
499 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
30697226 |
aagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 326 - 543
Target Start/End: Complemental strand, 4130389 - 4130173
Alignment:
| Q |
326 |
gagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaa |
425 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
4130389 |
gagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaatttacgtggaaatccctcaacaaataaagggaaaa |
4130290 |
T |
|
| Q |
426 |
aaccacggggcaagagtagagaactttcactaagtggaa-aaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaa |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||| ||||||||||| ||||||| ||||||||| ||| |
|
|
| T |
4130289 |
aaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagagacaaattacc-ctctctctt-gaaa |
4130192 |
T |
|
| Q |
525 |
taggagaatacaaacacta |
543 |
Q |
| |
|
||||| ||||| ||||||| |
|
|
| T |
4130191 |
taggacaatactaacacta |
4130173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 364775 - 364683
Alignment:
| Q |
325 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataa |
417 |
Q |
| |
|
||||||| |||||| ||||| || |||||||| ||| ||||||| ||||| || |||||||||||||||| ||| ||||| ||| ||||| |
|
|
| T |
364775 |
agagtaataaaataatatcatacaattaaaataatagatgagaaaaaaggaatcgaccacacaatatttacgttgaatccccttaaccaataa |
364683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University