View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_10 (Length: 473)
Name: NF14917_low_10
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 13134231 - 13134622
Alignment:
| Q |
11 |
catcatcagaacaagcaaagttataagagctta---aaggtatatatgatgatgatggagagcccagatctttccccacctcaaatagacacatctcgac |
107 |
Q |
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| T |
13134231 |
catcatcagaacaagcaaagttataagagcttatcaaaggtatatatgatgatgatggagagcccagatctttccccacctcaaatagacacatctcgac |
13134330 |
T |
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| Q |
108 |
cgtccctcggtttcccactaggtactgctctcctcttgctcatcatcttcagcttaagtggtatcttctcatgttgctaccactgggaaaagtttcgttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13134331 |
cgtccctcggtttcccactaggtactgctctcctcttgctcatcatcttcagcttaagtggtatcttctcatgttgctaccactgggaaaagtttcgttc |
13134430 |
T |
|
| Q |
208 |
acttcatcaatctctctctcatcttgaggctgcacaagcacatacccaatccccaccttccaagtctaaacctcactccacggtaacaattcttctctgg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13134431 |
acttcatcaatctctctctcatcttgaggctgcacaagcacatacccaatccccaccttccaagtctaaacctcactccacggtaacaattcttctctgg |
13134530 |
T |
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| Q |
308 |
cttcatctatgcttaatttgaaattataaaattggtacacgattatataaatattttgtctcaccaaagagctgtagttcttattttttctt |
399 |
Q |
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| T |
13134531 |
cttcatctatgcttaatttgaaattataaaattggtacacgattatataaatattttgtctcaccaaagagctgtagttcttattttttctt |
13134622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 458
Target Start/End: Original strand, 13134647 - 13134681
Alignment:
| Q |
424 |
ctataattaattttcaagattctaacgaccatttt |
458 |
Q |
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| T |
13134647 |
ctataattaattttcaagattctaacgaccatttt |
13134681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 30237300 - 30237169
Alignment:
| Q |
126 |
taggtactgctctcctcttgctcatcatcttcagcttaagtggtatcttctcatgttgctaccactgggaaaagtttcgttcacttcatcaatctctctc |
225 |
Q |
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| T |
30237300 |
taggtactgctctcctcttgctcatcatcttcagcttaagtggtatcttctcatgttgctaccactgggaaaagtttctttcacttcatcaatctctctc |
30237201 |
T |
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| Q |
226 |
tcatcttgaggctgcacaagcacatacccaat |
257 |
Q |
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| T |
30237200 |
tcatcttgagtctccacaagcacatactcaat |
30237169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 30237337 - 30237302
Alignment:
| Q |
56 |
atgatgatggagagcccagatctttccccacctcaa |
91 |
Q |
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| T |
30237337 |
atgatgatggagagcccagatctttccccacctcaa |
30237302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 28232718 - 28232814
Alignment:
| Q |
99 |
catctcgaccgtccctcggtttcccactaggtactgctctcctcttgctcatcatcttcagcttaagtggtatcttctcatgttgctaccactggga |
195 |
Q |
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| T |
28232718 |
catctcgaccatcccttggtttccctttgggcactgcccttctcttgatcatcatttttagcttgagtggtatcctctcttgttgctaccattggga |
28232814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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