View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14917_low_14 (Length: 399)
Name: NF14917_low_14
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 106 - 351
Target Start/End: Complemental strand, 4090450 - 4090205
Alignment:
| Q |
106 |
tacatctttctcaagctaattataacaactgctagtagtagtgtatattatgttgggaaatcttgcggagtgcctacagctaatgatcaggtccatcaag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4090450 |
tacatctttctcaagctaattataacaactgctagtagtagtgtatattatgttgggaaatcttgcggagtgcctacagctaatgatcaggtccatcaag |
4090351 |
T |
|
| Q |
206 |
agaccatgacaccgcatccacccaaaacctagaggattaagcatatgagtccccctctcttatatatctttatttaacacattcctagtcaatgtggtac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4090350 |
agaccatgacaccgcatccacccaaaacctagaggattaagcatatgagtccccctctcttatatatctttatttaacacattcctagtcaatgtggtac |
4090251 |
T |
|
| Q |
306 |
taacaactcatacttaaatttcaatgatatattatatgctatgaag |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4090250 |
taacaactcatacttaaatttcaatgatatattatatgctatgaag |
4090205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 4090537 - 4090484
Alignment:
| Q |
19 |
aaaaagtcaaagaagcttgatccaaggttcctagtgatcttctgttcattccat |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4090537 |
aaaaagtcaaagaagcttgatccaaggttcctagtgatcttctgttcattccat |
4090484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University