View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_15 (Length: 374)
Name: NF14917_low_15
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 31069513 - 31069881
Alignment:
| Q |
20 |
cttaggagctggctcgatattcttgaaccacgaagacatgaatctagctccgg--------------ttgagtagattacgaatcgccataactcgtggg |
105 |
Q |
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| T |
31069513 |
cttaggagctggctcgatattcctgaaccacgaagacatgaatctagctccggcaacgaagctccggttgagtagattacgaatcgccataactcgtggg |
31069612 |
T |
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| Q |
106 |
aacttaatatgtannnnnnngataaaataattcccactgaatttattttgcgtattttaatgtgtttttatatcctaccgtacgttcttttaatatgtta |
205 |
Q |
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| T |
31069613 |
aactta-tatgtatttttttgataaaataattcccactgaatttattttgcgtattttaatgtgtttttatatcctaccgtacgttcttttaatatgtta |
31069711 |
T |
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| Q |
206 |
a----tgcatgtcacgttcttctttgaaaatcgtattggtgttcatttgaatgatccaaaccacggttttcaagctcatttttccttgtaatgataataa |
301 |
Q |
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| T |
31069712 |
attaatgcatgtcacgttcttgtttgaaaatcgtattggtgttcatttgaatgatccaaaccacggttttcaagctcatttttccttgtaatgataataa |
31069811 |
T |
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| Q |
302 |
accacatgctacatttgata-------tgatttgcaaaatgttgaatctcaccgttcagttttccctatg |
364 |
Q |
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| T |
31069812 |
accacatgctacatttgatacaaaacttgatttgcaaaatgttgaatctcaccgttcagttttccctatg |
31069881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 31078127 - 31078180
Alignment:
| Q |
20 |
cttaggagctggctcgatattcttgaaccacgaagacatgaatctagctccggt |
73 |
Q |
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|||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
31078127 |
cttaggagctggttcgatgttcctgaaccatgaagacatgaatctagctccggt |
31078180 |
T |
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