View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_16 (Length: 351)
Name: NF14917_low_16
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 14 - 351
Target Start/End: Original strand, 46447428 - 46447765
Alignment:
| Q |
14 |
ccaacagcatagaaattcttgccagtcacactgtttaattatgcagcaaactatgcagtacagaatgattgttaaaaacttgactgtaaaaagaaacaat |
113 |
Q |
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| T |
46447428 |
ccaacagcatagaaattcttgccagtcacactgtttaattatgcagcaaactatgcagtacagaatgattgttaaaaacttgactgtaaaaagaaacaat |
46447527 |
T |
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| Q |
114 |
gtaaaacaatacgtgagtcagttgtacataaagtttattttgaaaataactatcaatccctcgttttctattcgaccagtagcgttattttgtatatctt |
213 |
Q |
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| T |
46447528 |
gtaaaacaatacgtgagtcagttgtacataaagtttattttgaaaataactatcaatccctcgttttctattcgaccagtagcgttattttgtatatctt |
46447627 |
T |
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| Q |
214 |
ttgtactagagaaagaatgcttagaccgaggccacaataggctgtttggaaattggaattaatgagaacaactctctcgattctttatagcttgagacac |
313 |
Q |
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| T |
46447628 |
ttgtactagagaaagaatgcttagaccgaggccacaataggctgtttggaaattggaattaatgagaacaactctctcgattctttatagcttgagacac |
46447727 |
T |
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| Q |
314 |
tatttttggtgttttgctacactctgcttggatttatc |
351 |
Q |
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| T |
46447728 |
tatttttggtgttttgctacactctgcttggatttatc |
46447765 |
T |
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