View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14917_low_2 (Length: 678)

Name: NF14917_low_2
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14917_low_2
NF14917_low_2
[»] chr2 (12 HSPs)
chr2 (515-666)||(28610022-28610173)
chr2 (515-666)||(4919827-4919978)
chr2 (515-619)||(28611264-28611368)
chr2 (515-615)||(4921074-4921174)
chr2 (554-666)||(45699568-45699680)
chr2 (516-627)||(8321247-8321358)
chr2 (529-663)||(19397544-19397678)
chr2 (512-617)||(19398814-19398919)
chr2 (608-666)||(1147842-1147900)
chr2 (538-592)||(45699523-45699577)
chr2 (605-645)||(28544941-28544981)
chr2 (610-663)||(9474020-9474073)
[»] chr1 (13 HSPs)
chr1 (510-663)||(14479483-14479636)
chr1 (515-666)||(51446808-51446959)
chr1 (515-666)||(28051573-28051723)
chr1 (515-619)||(14478266-14478370)
chr1 (510-619)||(51445585-51445694)
chr1 (515-619)||(28050321-28050425)
chr1 (529-666)||(40533569-40533706)
chr1 (515-666)||(12667240-12667391)
chr1 (515-666)||(48528862-48529013)
chr1 (529-611)||(40634711-40634793)
chr1 (515-595)||(48527534-48527614)
chr1 (515-595)||(26286412-26286492)
chr1 (628-664)||(50679791-50679827)
[»] chr4 (23 HSPs)
chr4 (515-666)||(8363354-8363505)
chr4 (515-666)||(26495122-26495273)
chr4 (515-666)||(36244732-36244883)
chr4 (515-666)||(56156935-56157086)
chr4 (515-666)||(52137426-52137577)
chr4 (512-619)||(36243516-36243623)
chr4 (515-619)||(26496321-26496425)
chr4 (515-619)||(56157508-56157612)
chr4 (509-619)||(20625516-20625626)
chr4 (515-619)||(20620139-20620243)
chr4 (515-666)||(35348797-35348948)
chr4 (515-611)||(52138815-52138910)
chr4 (516-666)||(36846525-36846674)
chr4 (515-666)||(39056425-39056576)
chr4 (584-666)||(44499949-44500031)
chr4 (509-666)||(26631184-26631341)
chr4 (63-125)||(40823126-40823188)
chr4 (628-666)||(307773-307811)
chr4 (628-666)||(46795994-46796032)
chr4 (633-666)||(41348354-41348387)
chr4 (515-595)||(1519811-1519891)
chr4 (515-595)||(1521230-1521310)
chr4 (515-595)||(35350144-35350224)
[»] scaffold0114 (1 HSPs)
scaffold0114 (515-666)||(38540-38691)
[»] chr3 (10 HSPs)
chr3 (515-666)||(49380919-49381070)
chr3 (515-666)||(13621923-13622074)
chr3 (515-619)||(13620920-13621024)
chr3 (515-612)||(49379701-49379798)
chr3 (550-666)||(14744098-14744214)
chr3 (627-666)||(8372584-8372623)
chr3 (620-666)||(7921611-7921657)
chr3 (628-666)||(43345429-43345467)
chr3 (624-661)||(7271564-7271601)
chr3 (601-666)||(10301783-10301848)
[»] chr7 (33 HSPs)
chr7 (515-666)||(41329435-41329586)
chr7 (17-322)||(20285561-20285868)
chr7 (515-663)||(32653463-32653611)
chr7 (550-666)||(35296783-35296899)
chr7 (515-619)||(39981317-39981421)
chr7 (515-619)||(41328219-41328323)
chr7 (16-115)||(20274444-20274543)
chr7 (515-666)||(666726-666877)
chr7 (516-666)||(43442728-43442878)
chr7 (515-666)||(10955845-10955996)
chr7 (61-124)||(20295317-20295380)
chr7 (332-390)||(20285958-20286016)
chr7 (21-110)||(20264676-20264765)
chr7 (369-462)||(20295611-20295704)
chr7 (21-125)||(20232218-20232322)
chr7 (445-511)||(20286012-20286079)
chr7 (608-666)||(26146672-26146730)
chr7 (17-110)||(20244283-20244376)
chr7 (17-110)||(20248321-20248414)
chr7 (20-112)||(20280147-20280239)
chr7 (515-567)||(32653731-32653783)
chr7 (584-666)||(44376653-44376735)
chr7 (584-666)||(44385520-44385602)
chr7 (63-125)||(20289956-20290018)
chr7 (627-666)||(17288210-17288249)
chr7 (197-268)||(20295432-20295503)
chr7 (631-666)||(25532257-25532292)
chr7 (632-666)||(29589235-29589269)
chr7 (607-657)||(29861588-29861638)
chr7 (624-666)||(43931834-43931876)
chr7 (21-110)||(20167410-20167499)
chr7 (515-595)||(669424-669504)
chr7 (515-595)||(10957190-10957270)
[»] chr5 (20 HSPs)
chr5 (515-666)||(11796569-11796719)
chr5 (515-619)||(23325912-23326016)
chr5 (515-619)||(23333979-23334083)
chr5 (516-666)||(10736903-10737053)
chr5 (515-619)||(11797545-11797649)
chr5 (607-663)||(10978247-10978303)
chr5 (601-658)||(9219262-9219319)
chr5 (624-666)||(1273195-1273237)
chr5 (515-619)||(10735763-10735867)
chr5 (515-619)||(41144530-41144634)
chr5 (586-661)||(4124828-4124903)
chr5 (628-666)||(15857586-15857624)
chr5 (550-666)||(13519507-13519628)
chr5 (628-664)||(18695617-18695653)
chr5 (628-663)||(5384317-5384352)
chr5 (624-666)||(22812354-22812397)
chr5 (628-666)||(8188168-8188206)
chr5 (569-619)||(13520794-13520844)
chr5 (628-665)||(224559-224596)
chr5 (628-664)||(21389113-21389149)
[»] scaffold0219 (2 HSPs)
scaffold0219 (515-663)||(6895-7042)
scaffold0219 (509-627)||(8194-8312)
[»] chr6 (4 HSPs)
chr6 (515-619)||(11722786-11722890)
chr6 (614-661)||(138176-138223)
chr6 (614-661)||(146197-146244)
chr6 (545-619)||(21777496-21777570)
[»] chr8 (14 HSPs)
chr8 (515-663)||(9853567-9853715)
chr8 (515-619)||(9854891-9854995)
chr8 (533-666)||(42793717-42793850)
chr8 (529-665)||(38697170-38697306)
chr8 (515-661)||(43203250-43203396)
chr8 (574-666)||(31844427-31844519)
chr8 (601-666)||(24191463-24191528)
chr8 (527-619)||(38697880-38697972)
chr8 (628-666)||(16362529-16362567)
chr8 (629-666)||(34616245-34616282)
chr8 (515-595)||(28291295-28291375)
chr8 (515-595)||(28291401-28291481)
chr8 (622-666)||(36757188-36757232)
chr8 (607-647)||(45396002-45396042)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 28610022 - 28610173
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28610022 cttaattggacatttggtcacctaaataattatgagtttacattttggtcccataaattgtaaaattcacattttggtccccttggttttgctccgtcag 28610121  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28610122 tcaaattgatcccatccgttagttttttaatgtttaaaatttttgatatgat 28610173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 4919827 - 4919978
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||| |||||||||||||| |||||| |||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  4919827 cttaattggacatttggtcctctaaataattatgcatttacaatttggtcccataaattataaaatccacattttggtccccttggttttgctccgtcag 4919926  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||||| ||||||||||||  | |||| |||||||||||||    
T  4919927 tcaaattgatcccctccattagttttttaacatctaaattttttgatatgat 4919978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 515 - 619
Target Start/End: Complemental strand, 28611368 - 28611264
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||  ||||||||||||||||||    
T  28611368 cttaattggatatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaattcatattttggtccttttggttttgctccgtcag 28611269  T
Q  615 tcaaa 619  Q
    |||||    
T  28611268 tcaaa 28611264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 515 - 615
Target Start/End: Complemental strand, 4921174 - 4921074
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||| ||||||||||||| |||||    
T  4921174 cttaattggacatttggtcctctaaataattatgcgtttacattttagtcccataaattgtaaaactcacattttggtcctcttggttttgctctgtcag 4921075  T
Q  615 t 615  Q
    |    
T  4921074 t 4921074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 554 - 666
Target Start/End: Original strand, 45699568 - 45699680
Alignment:
Q  554 acattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaa 653  Q
    |||||||| | ||| ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||     
T  45699568 acattttggttccataaattgtaaaactcacattttagtccctttggttttgctccgtcagtcaaattgaccccctccattagttttttaatatctaaat 45699667  T
Q  654 tttttgatatgat 666  Q
    |||||||||||||    
T  45699668 tttttgatatgat 45699680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 516 - 627
Target Start/End: Complemental strand, 8321358 - 8321247
Alignment:
Q  516 ttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagt 615  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||| |||||   ||||||| ||||| ||  |||||||||||| ||    
T  8321358 ttaattggacatttgatcctctaaataattatgcgtttacattttggtcccataaattttaaaaccaacattttagtccctttaattttgctccgtcggt 8321259  T
Q  616 caaattgatccc 627  Q
    ||||||||||||    
T  8321258 caaattgatccc 8321247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 529 - 663
Target Start/End: Original strand, 19397544 - 19397678
Alignment:
Q  529 tggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccc 628  Q
    ||||||||||||||||||   |||||||||||| ||||| ||||| ||||| | |||||||||||||  | |||||||||||| ||||| |  | ||||     
T  19397544 tggtcccctaaataattaccagtttacattttggtcccataaattttaaaactaacattttggtccctctcgttttgctccgttagtcataaaggtccct 19397643  T
Q  629 tccgttagttttttaatgtttaaaatttttgatat 663  Q
    ||||||| ||||||||||| ||||| |||||||||    
T  19397644 tccgttatttttttaatgtctaaaacttttgatat 19397678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 512 - 617
Target Start/End: Complemental strand, 19398919 - 19398814
Alignment:
Q  512 agacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgt 611  Q
    |||||||||||| | |||||| |||||||||||||   |||||||||||| ||||| |||||||||||   |||||||||||||  | ||||||||||||    
T  19398919 agacttaattggtcttttggttccctaaataattaccggtttacattttggtcccataaattgtaaaacctacattttggtccctcttgttttgctccgt 19398820  T
Q  612 cagtca 617  Q
     |||||    
T  19398819 tagtca 19398814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 608 - 666
Target Start/End: Original strand, 1147842 - 1147900
Alignment:
Q  608 ccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  1147842 ccgttagtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgat 1147900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 538 - 592
Target Start/End: Original strand, 45699523 - 45699577
Alignment:
Q  538 aaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggt 592  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  45699523 aaataattatgtgtttacattttggtcccataaattgtaaaattcacattttggt 45699577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 645
Target Start/End: Complemental strand, 28544981 - 28544941
Alignment:
Q  605 gctccgtcagtcaaattgatcccctccgttagttttttaat 645  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  28544981 gctccgtcagtcaaattgatcctctacgttagttttttaat 28544941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 663
Target Start/End: Complemental strand, 9474073 - 9474020
Alignment:
Q  610 gtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatat 663  Q
    |||||||||| || |||||||| |||  |||||||||||||| |||||||||||    
T  9474073 gtcagtcaaagtggtcccctccattaaatttttaatgtttaatatttttgatat 9474020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 510 - 663
Target Start/End: Complemental strand, 14479636 - 14479483
Alignment:
Q  510 aaagacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctcc 609  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  14479636 aaaggcttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttggttttgctcc 14479537  T
Q  610 gtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatat 663  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14479536 atcagtcaaattgatcccctccgttagttttttaatgattaaaatttttgatat 14479483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 515 - 666
Target Start/End: Complemental strand, 51446959 - 51446808
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||||  |||||||||||||||||||||||||||||||||    
T  51446959 cttaattggacatttggtcctctaaataattatgcatttacattttggtcacataaattgtaaaacccacattttggtccccttggttttgctccgtcag 51446860  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||||||||||||||||||| | |||| |||||||||||||    
T  51446859 tcaaattgatcccctccgttagttttttaatatctaaattttttgatatgat 51446808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 515 - 666
Target Start/End: Complemental strand, 28051723 - 28051573
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||| ||||| | ||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||    
T  28051723 cttaattggatatttgattccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtccccttgattttgctccgttag 28051624  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||  | ||||||| ||||||||||||||||||||||||||||||    
T  28051623 tcaaattgat-tcatccgttaattttttaatgtttaaaatttttgatatgat 28051573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 14478266 - 14478370
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||    
T  14478266 cttaattggacatttggtcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcctctgggttttgctccgtcag 14478365  T
Q  615 tcaaa 619  Q
    |||||    
T  14478366 tcaaa 14478370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 510 - 619
Target Start/End: Original strand, 51445585 - 51445694
Alignment:
Q  510 aaagacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctcc 609  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||| ||     
T  51445585 aaaggcttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcctcttggttttgatct 51445684  T
Q  610 gtcagtcaaa 619  Q
    ||||||||||    
T  51445685 gtcagtcaaa 51445694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 28050321 - 28050425
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||| ||||||||||||| |||||||||||| |||||||||||| ||||| |||||||||||| |||||||||||||||||| ||||||||||| ||    
T  28050321 cttaattagacatttggtcccttaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtccccttgattttgctccgttag 28050420  T
Q  615 tcaaa 619  Q
    |||||    
T  28050421 tcaaa 28050425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 529 - 666
Target Start/End: Complemental strand, 40533706 - 40533569
Alignment:
Q  529 tggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccc 628  Q
    |||||||||||||||||||  |||||||||||| | ||| |||||||||||   |||||||||||||  | | |||||||||| |||||||  | |||||    
T  40533706 tggtcccctaaataattatcagtttacattttggttccataaattgtaaaaccaacattttggtccctctcgctttgctccgttagtcaaaaaggtcccc 40533607  T
Q  629 tccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||| ||||||||||| ||||| ||||||||||||    
T  40533606 tccgttaattttttaatgtctaaaacttttgatatgat 40533569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 515 - 666
Target Start/End: Complemental strand, 12667391 - 12667240
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||  ||| |||| ||||||||||||  |||| ||||||| ||| | || | |||||||| |||||| ||||||  | |||||||||||| ||    
T  12667391 cttaattggatttttagtcctctaaataattatcagttttcattttggtcctagaattcgtaaaattaacatttcggtccctcttgttttgctccgttag 12667292  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||| ||| ||||||||||||||||||||||||  ||| |||||||| ||||    
T  12667291 tcaacttggtcccctccgttagttttttaatgtcgaaattttttgatttgat 12667240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 666
Target Start/End: Complemental strand, 48529013 - 48528862
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||| |||||||||| || |||||    |||||||||||| ||||| || | |||||||  ||||||| |||||  |  |||| |||||| ||    
T  48529013 cttaattggacttttggtcccccaagtaatttgttgtttacattttggtcccataactcgtaaaatcaacattttagtccctcttatttttctccgttag 48528914  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||| ||| |||| ||||||||||||||||| | ||||| ||||||| ||||    
T  48528913 tcaatttggtcccatccgttagttttttaatatctaaaacttttgatttgat 48528862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 611
Target Start/End: Complemental strand, 40634793 - 40634711
Alignment:
Q  529 tggtcccctaaataattatgc-gtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgt 611  Q
    ||||||||||||||||| ||| |||||||||||||||| | ||||  ||||| ||||||||| ||||||||| |||||||||||    
T  40634793 tggtcccctaaataatt-tgcagtttacattttgatccgataaatcataaaactcacattttcgtccccttgattttgctccgt 40634711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 515 - 595
Target Start/End: Original strand, 48527534 - 48527614
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccc 595  Q
    ||||||||||  ||||||||||||| |||||    |||||||||||| ||||| || | |||||||| |||||||||||||    
T  48527534 cttaattggatttttggtcccctaagtaatttgttgtttacattttggtcccataactcgtaaaattaacattttggtccc 48527614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 595
Target Start/End: Original strand, 26286412 - 26286492
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccc 595  Q
    ||||||||||| ||||||||||||| |||||   ||||| ||||||| ||||| || | |||||||  |||| ||||||||    
T  26286412 cttaattggacttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccc 26286492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 628 - 664
Target Start/End: Complemental strand, 50679827 - 50679791
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatatg 664  Q
    |||||||||||||||||||| |||| |||||||||||    
T  50679827 ctccgttagttttttaatgtctaaattttttgatatg 50679791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 515 - 666
Target Start/End: Complemental strand, 8363505 - 8363354
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| ||||||||||||||| ||||||||||||||| ||    
T  8363505 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccctttggttttgctccgttag 8363406  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8363405 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 8363354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 26495122 - 26495273
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||| | ||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  26495122 cttaattgaatatttggtcccctaaataattatgagtttacattttgctcctataaattgtaaaactcacattttggtccccttggttttgctccgtcag 26495221  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26495222 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 26495273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 515 - 666
Target Start/End: Complemental strand, 36244883 - 36244732
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||| ||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  36244883 cttaattggatatttggtccccaaaataattatgagtttacattttgatcccataaattgtaaaactcacatttttgtccccttgattttgctccgtcag 36244784  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36244783 tcaaattgatcccctccgttagttttttaatgtttaaaatgtttgatatgat 36244732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 56156935 - 56157086
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||     
T  56156935 cttaattggatatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcacattttggtctccttggttttgctccgtcaa 56157034  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  56157035 tcaaattgaccccctccgttagttttttaatgtttaaaatttttgatatgat 56157086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 52137426 - 52137577
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||| ||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||   |||||||||||| ||||||||| ||||||| |    
T  52137426 cttaattggatatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggtcctcttggttttactccgtcgg 52137525  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||| |||  |||||||||||||| ||||| |||| |||||||||||||    
T  52137526 tcaaattcatcatctccgttagtttttcaatgtctaaattttttgatatgat 52137577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 512 - 619
Target Start/End: Original strand, 36243516 - 36243623
Alignment:
Q  512 agacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgt 611  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| |||||||||||||||||| ||||||||| ||    
T  36243516 agacttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttagttttgctctgt 36243615  T
Q  612 cagtcaaa 619  Q
     |||||||    
T  36243616 tagtcaaa 36243623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 515 - 619
Target Start/End: Complemental strand, 26496425 - 26496321
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||| ||||| ||||||||||| |||||||||||||| ||| | |||||||||||||    
T  26496425 cttaattggacatttggtcctctaactaattatgtgtttacattttggtcccataaattgtaaaactcacattttggtcctcttaggtttgctccgtcag 26496326  T
Q  615 tcaaa 619  Q
    |||||    
T  26496325 tcaaa 26496321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 515 - 619
Target Start/End: Complemental strand, 56157612 - 56157508
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |  || ||||||||||| ||||||||||||||| ||||||||||||| | ||    
T  56157612 cttaattggatatttggtcctctaaataattatgcgtttacattttggtttcataaattgtaaaactcacattttggtccctttggttttgctccattag 56157513  T
Q  615 tcaaa 619  Q
    |||||    
T  56157512 tcaaa 56157508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 509 - 619
Target Start/End: Complemental strand, 20625626 - 20625516
Alignment:
Q  509 aaaagacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctc 608  Q
    ||||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| || |||||||| | ||| ||  |||| |||||||||| ||    
T  20625626 aaaaggcttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaacttacagttgagtcctcttggttttggtc 20625527  T
Q  609 cgtcagtcaaa 619  Q
    |||||||||||    
T  20625526 cgtcagtcaaa 20625516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 20620139 - 20620243
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||| ||||| || |||||||| ||||| ||  |||| |||||||||| ||||||||    
T  20620139 cttaattggacctttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtcag 20620238  T
Q  615 tcaaa 619  Q
    |||||    
T  20620239 tcaaa 20620243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 35348797 - 35348948
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||| ||||||||| ||| |||||    |||| ||||||| ||||| || |||||||||  || |||| |||||  | |||||||| ||||||    
T  35348797 cttaattggacttttggtcccttaagtaatttgttgttttcattttggtcccataacttgtaaaatcaacgttttagtccctcttgttttgcttcgtcag 35348896  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||| ||  ||||||||||||| |||||||||| ||||||||||||| ||||    
T  35348897 tcaatttagtcccctccgttagctttttaatgtctaaaatttttgatttgat 35348948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 515 - 611
Target Start/End: Complemental strand, 52138910 - 52138815
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgt 611  Q
    ||||||| |||||||| ||| ||||||||||||||||||| ||||||||| || ||||||||| |  | ||||||||||| ||||||||||||||||    
T  52138910 cttaattcgacatttgatcctctaaataattatgcgtttatattttgatcacataaattgtaaga-ccccattttggtcctcttggttttgctccgt 52138815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 516 - 666
Target Start/End: Complemental strand, 36846674 - 36846525
Alignment:
Q  516 ttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagt 615  Q
    |||||||||| ||||| ||||||| |||||    |||| ||||||| ||||| || | |||||||  |||||||||||||  | ||||||||||||  ||    
T  36846674 ttaattggacttttggccccctaagtaatttgttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttcgt 36846575  T
Q  616 caaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||| ||| |||| ||||||||| ||||||||| |||| |||||||| ||||    
T  36846574 caatttggtcccttccgttagt-ttttaatgtctaaattttttgatttgat 36846525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 39056425 - 39056576
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||| ||||||||| ||| |||||    |||| ||||||| || || || |||||||||  || |||| |||||  | |||||||||||| ||    
T  39056425 cttaattggacttttggtcccttaagtaatttgttgttttcattttggtctcataatttgtaaaatcaacgttttagtccctcttgttttgctccgttag 39056524  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||| ||  | ||| ||||||| |||||||||| ||||||||||||| ||||    
T  39056525 tcaatttagttcccaccgttagctttttaatgtctaaaatttttgatttgat 39056576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 666
Target Start/End: Complemental strand, 44500031 - 44499949
Alignment:
Q  584 cattttggtccccttggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||| |   ||||||||||| |||||||||||||| |||||||||||| ||||||| || | |||||||| ||||    
T  44500031 cattttggtcccttaacttttgctccgttagtcaaattgatccactccgttagtttgttaatgtctatattttttgatttgat 44499949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 666
Target Start/End: Complemental strand, 26631341 - 26631184
Alignment:
Q  509 aaaagacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctc 608  Q
    ||||| ||||||||||| |||||||||| || |||||     ||| ||||||| || || || | |||||||  |||||||||| ||  | |||||||||    
T  26631341 aaaaggcttaattggacttttggtcccccaagtaatttgttattttcattttggtctcataactcgtaaaatcaacattttggttcctcttgttttgctc 26631242  T
Q  609 cgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||| |||||| ||| ||||||||||| ||  |||||||| |||| |||||||| ||||    
T  26631241 cgttagtcaatttggtcccctccgtttgtcctttaatgtctaaattttttgatttgat 26631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 40823188 - 40823126
Alignment:
Q  63 ttccatcaacaatgtcagtattacagaaatccgtggcagatagcacactaagggctctaagaa 125  Q
    ||||||||| | ||||||||||||||| ||| ||||||||||||| |||| | ||||||||||    
T  40823188 ttccatcaatagtgtcagtattacagacatcagtggcagatagcaaactaggagctctaagaa 40823126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 628 - 666
Target Start/End: Complemental strand, 307811 - 307773
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  307811 ctccgttggttttttaatgtttaaattttttgatatgat 307773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 628 - 666
Target Start/End: Complemental strand, 46796032 - 46795994
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  46796032 ctccgttagttttttaatgtctaaattttttgatatgat 46795994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 633 - 666
Target Start/End: Original strand, 41348354 - 41348387
Alignment:
Q  633 ttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||| ||||||||||||||||||    
T  41348354 ttagttttttaatgtataaaatttttgatatgat 41348387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 595
Target Start/End: Original strand, 1519811 - 1519891
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccc 595  Q
    ||||||||||| ||||||||||||| |||||   ||||| ||||||| ||||| || | |||||||  |||| ||||||||    
T  1519811 cttaattggacttttggtcccctaactaatttgtcgttttcattttggtcccataattcgtaaaatcaacatattggtccc 1519891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 595
Target Start/End: Complemental strand, 1521310 - 1521230
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccc 595  Q
    ||||||||||| |||||||| |||| |||||    |||| ||||||||||||| || | |||||||  |||||||||||||    
T  1521310 cttaattggacttttggtcctctaactaatttgttgttttcattttgatcccataattcgtaaaatcaacattttggtccc 1521230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 595
Target Start/End: Complemental strand, 35350224 - 35350144
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccc 595  Q
    ||||||||||| ||||||||||||| |||||    |||| |||||||||| || || | |||||||| || ||||||||||    
T  35350224 cttaattggacttttggtcccctaagtaatttgttgttttcattttgatctcataactcgtaaaattaacgttttggtccc 35350144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 120; Significance: 5e-61; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 38540 - 38691
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||    
T  38540 cttaattggacatttggtcccctaaataattatgagtttccattttggtcccataaattgtaaaactcacattttggtccccttggttttcctccgtcag 38639  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  38640 tcaaattgatcccctccgttagttttttaatgattaaaattttttatatgat 38691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 5e-61; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 515 - 666
Target Start/End: Complemental strand, 49381070 - 49380919
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| ||| |||||||| |||||||||||||||||||||    
T  49381070 cttaattggatatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcatattttggtacccttggttttgctccgtcag 49380971  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49380970 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 49380919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 515 - 666
Target Start/End: Complemental strand, 13622074 - 13621923
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| ||||||||||||||||||| ||||||| ||||||    
T  13622074 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttgattttgcttcgtcag 13621975  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  13621974 tcaaattgatcccctcagttagttttttaatatttaaaatttttgatatgat 13621923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 13620920 - 13621024
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||||||||||| |||||||||||||||||||    
T  13620920 cttaatttgacatttggtcctctaaataattatgcgtttacattttggtctcataaattgtaaaactcacattttggtcctcttggttttgctccgtcag 13621019  T
Q  615 tcaaa 619  Q
    |||||    
T  13621020 tcaaa 13621024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 515 - 612
Target Start/End: Original strand, 49379701 - 49379798
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtc 612  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||| ||||||||| || | |||||||||||||||||    
T  49379701 cttaattggacatttggtcctctaaataattatgcgtttatattttggtcccataaattgtaaaactcacattttagttctcttggttttgctccgtc 49379798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 550 - 666
Target Start/End: Original strand, 14744098 - 14744214
Alignment:
Q  550 gtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgttt 649  Q
    |||||||||||| || || ||||||||||| ||||||||||||  | ||||||||||||||| |||||||||||||  |||||||| ||||||||||| |    
T  14744098 gtttacattttggtctcataaattgtaaaactcacattttggtttcattggttttgctccgttagtcaaattgatcatctccgttaattttttaatgtct 14744197  T
Q  650 aaaatttttgatatgat 666  Q
    ||| |||||||||||||    
T  14744198 aaattttttgatatgat 14744214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 627 - 666
Target Start/End: Complemental strand, 8372623 - 8372584
Alignment:
Q  627 cctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  8372623 cctccgttagttttttaatgtttaatatttttgatatgat 8372584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 620 - 666
Target Start/End: Complemental strand, 7921657 - 7921611
Alignment:
Q  620 ttgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  7921657 ttgatcctctccgttagttttttaatgtctaatatttttgatatgat 7921611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 666
Target Start/End: Original strand, 43345429 - 43345467
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  43345429 ctccgttagttttttaatgtttaatatttttgatatgat 43345467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 624 - 661
Target Start/End: Complemental strand, 7271601 - 7271564
Alignment:
Q  624 tcccctccgttagttttttaatgtttaaaatttttgat 661  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  7271601 tcccctccgttagttttttaatgtctaaactttttgat 7271564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 601 - 666
Target Start/End: Complemental strand, 10301848 - 10301783
Alignment:
Q  601 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||| |||||| ||| |  |||| |||||||||||||||| |||| |||||||| ||||    
T  10301848 ttttgctccgttagtcaatttggtgtcctctgttagttttttaatgtctaaattttttgatttgat 10301783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 515 - 666
Target Start/End: Complemental strand, 41329586 - 41329435
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| ||||||||||||||||||| |||| |||||||||    
T  41329586 cttaattggacatttggtcccctaaataattatgagtttacattttggtcctataaattgtaaaactcacattttggtccccttgattttactccgtcag 41329487  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  41329486 tcaaattgatcccctccgttagatttttaatgtttaaattttttgatgtgat 41329435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 20285561 - 20285868
Alignment:
Q  17 agaatatgttgaattcaaactggcctgaagaatatcaaagtggcagttccatcaacaatgtcagtattacagaaatccgtggcagatagcacactaaggg 116  Q
    |||||| ||||||| |||| |||| |||||||||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  20285561 agaatacgttgaatccaaagtggcatgaagaatatgaaagtgttagttctatcaacaatgtcagtattacagaaatccgtggcagatagcacactaagga 20285660  T
Q  117 ctctaagaannnnnnnnnngatgtcattggatatgtagtcaatgctagaaactctgtaatataattgatattctttgtgggataagaaaactttcgtata 216  Q
    |||  ||||           |||||| ||||||||| |||||||||||||||| ||||||  |  ||||||  ||||||||||||||||||| | ||| |    
T  20285661 ctc--agaaatgtttttttaatgtcaatggatatgtggtcaatgctagaaactttgtaattgatatgatatggtttgtgggataagaaaactctagtaga 20285758  T
Q  217 atagaagatgcattatgtatcttccttgattgcctcttttcttattgatacactttt----tgttttctgctgcatactgccttggttttggatagtttg 312  Q
    ||  |||||||||| ||||  ||| ||||  ||||||||||||||||||||| ||||    ||||||||| |||  |||||||||| | |||||||||||    
T  20285759 attaaagatgcattttgtagtttcgttgagagcctcttttcttattgatacaatttttgcatgttttctgttgctgactgccttggatgtggatagtttg 20285858  T
Q  313 tacgttgata 322  Q
    || |||||||    
T  20285859 tatgttgata 20285868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 515 - 663
Target Start/End: Original strand, 32653463 - 32653611
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||| || || ||||||||||| |||||||| ||||||||||||||||||||||| |    
T  32653463 cttaattggatatttagtcccttaaataattatgcgtttacattttggtctcataaattgtaaaactcacatttcggtccccttggttttgctccgtcgg 32653562  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatat 663  Q
    ||| | || |||| ||||||||||||||||||  |||||||||||||||    
T  32653563 tcagaatggtcccatccgttagttttttaatgactaaaatttttgatat 32653611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 550 - 666
Target Start/End: Complemental strand, 35296899 - 35296783
Alignment:
Q  550 gtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgttt 649  Q
    |||||||||||| ||| | ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||  |||||||| ||||||||||| |    
T  35296899 gtttacattttggtcctataaattgtaaaactcacattttggtacccttggttttgctccgttagtcaaattgatcatctccgttaattttttaatgtct 35296800  T
Q  650 aaaatttttgatatgat 666  Q
    ||| |||||||||||||    
T  35296799 aaattttttgatatgat 35296783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 39981317 - 39981421
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||| ||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||  ||||||||||| ||||||    
T  39981317 cttaattggacatttgatcctctaaataattgtgcgtttacattttggtcccataaattgtaaaattcacattttggtccttttggttttgcttcgtcag 39981416  T
Q  615 tcaaa 619  Q
    |||||    
T  39981417 tcaaa 39981421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 41328219 - 41328323
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||| || ||||     
T  41328219 cttaattggacatttggtcctctaaataattatgcgtttacattttggtcccataaattgtaaaactcacattttggtcctcttggttttgatcagtcaa 41328318  T
Q  615 tcaaa 619  Q
    |||||    
T  41328319 tcaaa 41328323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 20274444 - 20274543
Alignment:
Q  16 cagaatatgttgaattcaaactggcctgaagaatatcaaagtggcagttccatcaacaatgtcagtattacagaaatccgtggcagatagcacactaagg 115  Q
    |||||||||||||||||||||||||||||||||| | ||||||  |||||||||||||||||||  || |||||||   ||||||||||| |||||||||    
T  20274444 cagaatatgttgaattcaaactggcctgaagaatgtaaaagtgttagttccatcaacaatgtcaccatgacagaaacatgtggcagatagtacactaagg 20274543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 666726 - 666877
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||  ||| |||||||||||||||||  |||| |||||||||| || || |  ||||||| | |||| ||||||  | |||||||||||| ||    
T  666726 cttaattggatttttagtcccctaaataattatcagttttcattttgatctcataactcataaaattaatatttcggtccctcttgttttgctccgttag 666825  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||| ||| |||||||||||||| |||||||||  ||| |||||||| ||||    
T  666826 tcaatttggtcccctccgttagtattttaatgtcgaaattttttgatttgat 666877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 516 - 666
Target Start/End: Complemental strand, 43442878 - 43442728
Alignment:
Q  516 ttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagt 615  Q
    ||||||| || ||||||||||||| |||||    |||| ||| ||| ||||| || | |||||||  |||||||||||||  | |||||||||||| |||    
T  43442878 ttaattgaacttttggtcccctaagtaatttgttgttttcatattggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttagt 43442779  T
Q  616 caaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||| ||| |||||||||||||| ||||||||| |||| |||||||| ||||    
T  43442778 caatttggtcccctccgttagtcttttaatgtctaaattttttgatttgat 43442728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 10955845 - 10955996
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||| ||||||||| ||| |||||    |||| ||||||||| ||| || || ||||||  || |||| |||||  | |||||||||||| ||    
T  10955845 cttaattggacttttggtcccttaagtaatttgttgttttcattttgattccataacttataaaatcaacgttttagtccctcttgttttgctccgttag 10955944  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||| ||  ||||||||||||| |||||||||| ||||||||||||| ||||    
T  10955945 tcaatttagtcccctccgttagatttttaatgtctaaaatttttgatttgat 10955996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 20295317 - 20295380
Alignment:
Q  61 agttccatcaacaatgtcagtattacagaaatccgtggcagatagcacactaagggctctaaga 124  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| |||||||    
T  20295317 agttccattaacaatgtcagtattacacaaatcggtggcagatagcacactaagggttctaaga 20295380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 20285958 - 20286016
Alignment:
Q  332 ttttgaacattggctatgcattttatttgaagtacacaaaacaatttaattgaatatta 390  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||    
T  20285958 ttttgaacattggctatgcattttatttgaagtaaacaaaacaattcgattgaatatta 20286016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 20264676 - 20264765
Alignment:
Q  21 tatgttgaattcaaactggcctgaagaatatcaaagtggcagttccatcaacaatgtcagtattacagaaatccgtggcagatagcacac 110  Q
    |||||| |||||||| | ||| ||||||| ||||| |||| | |||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  20264676 tatgttaaattcaaagttgcccgaagaatgtcaaaatggctgctccatcaataatgtcagtattacagacatcagtggcagatagcacac 20264765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 369 - 462
Target Start/End: Original strand, 20295611 - 20295704
Alignment:
Q  369 aaaacaatttaattgaatattaattagtctggattcttttcaacataaaatattagaaattcattgttcatagtgttattaggtagattcgaaa 462  Q
    ||||||||  ||||||||||||||||||||||||| |||| |||| ||| |||||| ||||||||||| ||  ||| ||| |||||||||||||    
T  20295611 aaaacaatgaaattgaatattaattagtctggattgttttgaacaaaaagtattagtaattcattgttgatgatgtaattcggtagattcgaaa 20295704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 20232218 - 20232322
Alignment:
Q  21 tatgttgaattcaaactggcctgaagaatatcaaagtggcagttccatcaacaatgtcagtattacagaaatccgtggcagatagcacactaagggctct 120  Q
    |||||| |||||||| |  |||||||||| ||||| |||  |||||||||| ||||||||||| ||||| ||| |||||||||||||||| || || |||    
T  20232218 tatgttaaattcaaagtttcctgaagaatgtcaaaatggttgttccatcaataatgtcagtatcacagacatcagtggcagatagcacacaaacgggtct 20232317  T
Q  121 aagaa 125  Q
    |||||    
T  20232318 aagaa 20232322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 445 - 511
Target Start/End: Original strand, 20286012 - 20286079
Alignment:
Q  445 tattaggtagattcgaaaccacattatgttatcttttcaacct-tatgttcctcatttaatagataaa 511  Q
    ||||||||||||||||||||||||||| |||||| |||||||| ||| |||||| |||||||||||||    
T  20286012 tattaggtagattcgaaaccacattattttatctcttcaacctctatattcctcctttaatagataaa 20286079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 608 - 666
Target Start/End: Complemental strand, 26146730 - 26146672
Alignment:
Q  608 ccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  26146730 ccgttagtcaaattgatcccctccgttatttttttaatgtctaaactttttgatatgat 26146672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 20244283 - 20244376
Alignment:
Q  17 agaatatgttgaattcaaactggcctgaagaatatcaaagtggcagttccatcaacaatgtcagtattacagaaatccgtggcagatagcacac 110  Q
    |||||||||| |||||||| |   ||||||||| ||||| |||  ||||| |||| ||||||||||||||||| ||| ||||||||||||||||    
T  20244283 agaatatgttaaattcaaagttagctgaagaatgtcaaaatggttgttccgtcaataatgtcagtattacagacatcagtggcagatagcacac 20244376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 20248321 - 20248414
Alignment:
Q  17 agaatatgttgaattcaaactggcctgaagaatatcaaagtggcagttccatcaacaatgtcagtattacagaaatccgtggcagatagcacac 110  Q
    |||||||||| |||||||| |   ||||||||| ||||| |||  ||||| |||| ||||||||||||||||| ||| ||||||||||||||||    
T  20248321 agaatatgttaaattcaaagttagctgaagaatgtcaaaatggttgttccgtcaataatgtcagtattacagacatcagtggcagatagcacac 20248414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 20280147 - 20280239
Alignment:
Q  20 atatgttgaattcaaactggcctgaagaatatcaaagtggcagttccatcaacaatgtcagtattacagaaatccgtggcagatagcacacta 112  Q
    |||||||||||||||| | |||||||||| |||||| || | ||||||| || |||||||||||||||||  |  |||| |||||||||||||    
T  20280147 atatgttgaattcaaagtcgcctgaagaaaatcaaattgtctgttccattaataatgtcagtattacagatttatgtggtagatagcacacta 20280239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 515 - 567
Target Start/End: Complemental strand, 32653783 - 32653731
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatccca 567  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |||||    
T  32653783 cttaattggacatttggtcccctaaataattatgtatttacattttggtccca 32653731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 666
Target Start/End: Complemental strand, 44376735 - 44376653
Alignment:
Q  584 cattttggtccccttggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||| |   ||||||||| | ||||||||| |||| |||||||||||||||||||| |||| |||||||| ||||    
T  44376735 cattttggtcccttaacttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaattttttgatttgat 44376653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 666
Target Start/End: Complemental strand, 44385602 - 44385520
Alignment:
Q  584 cattttggtccccttggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||| |   ||||||||| | ||||||||| |||| |||||||||||||||||||| |||| |||||||| ||||    
T  44385602 cattttggtcccttaacttttgctccattagtcaaattaatccactccgttagttttttaatgtctaaattttttgatttgat 44385520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 20289956 - 20290018
Alignment:
Q  63 ttccatcaacaatgtcagtattacagaaatccgtggcagatagcacactaagggctctaagaa 125  Q
    ||||||||| | ||||||||||||||| ||| ||||||||||||| |||| | ||||||||||    
T  20289956 ttccatcaatagtgtcagtattacagacatcagtggcagatagcaaactaggagctctaagaa 20290018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 666
Target Start/End: Complemental strand, 17288249 - 17288210
Alignment:
Q  627 cctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  17288249 cctccgttagttttttaatgtctaaattttttgatatgat 17288210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 20295432 - 20295503
Alignment:
Q  197 gataagaaaactttcgtataatagaagatgcattatgtatcttccttgattgcctcttttcttattgataca 268  Q
    |||| ||||||| | |||||||| ||||||||| |||||| |||||||||| ||| || | |||||||||||    
T  20295432 gatatgaaaactctagtataataaaagatgcataatgtattttccttgatttcctattgttttattgataca 20295503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 666
Target Start/End: Original strand, 25532257 - 25532292
Alignment:
Q  631 cgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25532257 cgttagttttttaatgtttaatatttttgatatgat 25532292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 666
Target Start/End: Complemental strand, 29589269 - 29589235
Alignment:
Q  632 gttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||||||||||||| ||||    
T  29589269 gttagttttttaatgtttaaaatttttgatttgat 29589235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 607 - 657
Target Start/End: Original strand, 29861588 - 29861638
Alignment:
Q  607 tccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttt 657  Q
    ||||||||||||||||||||  |||||||||||||| |||| ||| |||||    
T  29861588 tccgtcagtcaaattgatccattccgttagtttttttatgtctaatatttt 29861638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 666
Target Start/End: Complemental strand, 43931876 - 43931834
Alignment:
Q  624 tcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||||||| ||| |||||||| |||||    
T  43931876 tcccctccgttagttttttaatgtctaacatttttgaaatgat 43931834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 20167499 - 20167410
Alignment:
Q  21 tatgttgaattcaaactggcctgaagaatatcaaagtggcagttccatcaacaatgtcagtattacagaaatccgtggcagatagcacac 110  Q
    |||||| |||||||| |  |||||||||| ||||| |||  |||||||||| ||||||||||| |||||  || |||| |||||| ||||    
T  20167499 tatgttaaattcaaagtttcctgaagaatgtcaaaatggttgttccatcaataatgtcagtatcacagacgtctgtggaagatagaacac 20167410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 595
Target Start/End: Complemental strand, 669504 - 669424
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccc 595  Q
    ||||||||||  ||||||||||||| |||||||  |||| ||||||| ||||| || | |||||||  |||||| ||||||    
T  669504 cttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataattcgtaaaatcaacatttcggtccc 669424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 595
Target Start/End: Complemental strand, 10957270 - 10957190
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccc 595  Q
    ||||||||||| ||||||||||||| |||||    |||| ||||||| ||||| || | |||||||| || ||||||||||    
T  10957270 cttaattggacttttggtcccctaagtaatttgttgttttcattttggtcccataactcgtaaaattaacgttttggtccc 10957190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 7e-54; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 515 - 666
Target Start/End: Original strand, 11796569 - 11796719
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||||| ||||    
T  11796569 cttaattggacatttggtcccctaaataattatgagtttacattttggtcccataaattgtaaaactcatattttggt-cccttggttttgctccctcag 11796667  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  11796668 tcaaattgatcccatccgctagttttttaatgtttaaaacttttgatatgat 11796719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 23325912 - 23326016
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| || |||||||| ||||| ||  |||| |||||||||| ||||||||    
T  23325912 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtcag 23326011  T
Q  615 tcaaa 619  Q
    |||||    
T  23326012 tcaaa 23326016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 515 - 619
Target Start/End: Complemental strand, 23334083 - 23333979
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| || |||||||| | ||| ||  |||| |||||||||| ||||||||    
T  23334083 cttaattggacatttggtcctctaaataattatgagtttacattttggtcccataagttgtaaaactaacagttgagtcctcttggttttggtccgtcag 23333984  T
Q  615 tcaaa 619  Q
    |||||    
T  23333983 tcaaa 23333979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 516 - 666
Target Start/End: Complemental strand, 10737053 - 10736903
Alignment:
Q  516 ttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagt 615  Q
    |||||||||| ||||||||||||| |||||    |||| ||||||| ||||| || | |||||||  |||||||||||||  | |||||||||||| | |    
T  10737053 ttaattggacttttggtcccctaagtaatttcttgttttcattttggtcccataactcgtaaaatcaacattttggtccctcttgttttgctccgttaat 10736954  T
Q  616 caaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||| ||| ||||||||||||  |||||||||| ||||||||||||| ||||    
T  10736953 caatttggtcccctccgttaactttttaatgtctaaaatttttgatttgat 10736903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 515 - 619
Target Start/End: Complemental strand, 11797649 - 11797545
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| || || || | |||||||  |||||||||||||  | ||||| |||||| ||    
T  11797649 cttaattggacatttggtcccctaaataattatgagtttacattttggtctcataactcgtaaaatcaacattttggtccctcttgtttttctccgttag 11797550  T
Q  615 tcaaa 619  Q
    |||||    
T  11797549 tcaaa 11797545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 607 - 663
Target Start/End: Complemental strand, 10978303 - 10978247
Alignment:
Q  607 tccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatat 663  Q
    ||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||    
T  10978303 tccgtcagtcaaagtgatcccctccgttagatttttaatgtttaatatttttgatat 10978247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 658
Target Start/End: Original strand, 9219262 - 9219319
Alignment:
Q  601 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaattttt 658  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||    
T  9219262 ttttgctccattagtcaatttgatcccctccgttagttttttaatgtctaaaattttt 9219319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 624 - 666
Target Start/End: Original strand, 1273195 - 1273237
Alignment:
Q  624 tcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  1273195 tcccctccgttagttttttaatgtttaatatttttgatatgat 1273237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 10735763 - 10735867
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||| ||||||||||||| ||||||   |||| ||||||| ||||| || | |||||||  || ||||||||||  | |||||||||||| ||    
T  10735763 cttaattggacttttggtcccctaagtaattacttgttttcattttggtcccataactcgtaaaatcaacgttttggtccctcttgttttgctccgttag 10735862  T
Q  615 tcaaa 619  Q
    |||||    
T  10735863 tcaaa 10735867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 619
Target Start/End: Complemental strand, 41144634 - 41144530
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||  ||||||||||||| |||||    |||| ||||||| ||||| ||||| ||||||  || |||||||||| ||| ||||||||||| ||    
T  41144634 cttaattggatttttggtcccctaattaatttgttgttttcattttggtcccataaattctaaaatcaacgttttggtccctttgattttgctccgttag 41144535  T
Q  615 tcaaa 619  Q
    |||||    
T  41144534 tcaaa 41144530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 586 - 661
Target Start/End: Original strand, 4124828 - 4124903
Alignment:
Q  586 ttttggtccccttggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgat 661  Q
    |||||||||| || |||||||||||| ||| || ||| |||||| | |||||| |||||||||||||| |||||||    
T  4124828 ttttggtcccttttgttttgctccgttagttaatttggtccccttcattagttgtttaatgtttaaaaattttgat 4124903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 628 - 666
Target Start/End: Complemental strand, 15857624 - 15857586
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  15857624 ctccgttagttttttaatgtttaatatttttgatatgat 15857586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 666
Target Start/End: Original strand, 13519507 - 13519628
Alignment:
Q  550 gtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccctccg-----ttagttttttaa 644  Q
    |||||||||||  ||||| || | | |||||  ||||||||||||   | ||||||||||||  |||||||||||||| ||||     ||||||||||||    
T  13519507 gtttacattttagtcccataactcgaaaaatcaacattttggtccttcttgttttgctccgtttgtcaaattgatcccttccgttagtttagttttttaa 13519606  T
Q  645 tgtttaaaatttttgatatgat 666  Q
    ||| ||||| ||||||||||||    
T  13519607 tgtctaaaacttttgatatgat 13519628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 664
Target Start/End: Complemental strand, 18695653 - 18695617
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatatg 664  Q
    |||||||||||||||||||| ||||||||||||||||    
T  18695653 ctccgttagttttttaatgtctaaaatttttgatatg 18695617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 663
Target Start/End: Complemental strand, 5384352 - 5384317
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatat 663  Q
    |||||||||||||||||||||||| |||||||||||    
T  5384352 ctccgttagttttttaatgtttaatatttttgatat 5384317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 666
Target Start/End: Complemental strand, 22812397 - 22812354
Alignment:
Q  624 tcccctccgttagtttttt-aatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  22812397 tcccctccgttagtttttttaatgtttaatatttttgatatgat 22812354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 628 - 666
Target Start/End: Complemental strand, 8188206 - 8188168
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  8188206 ctccgttagttttttaatgtctaaaatttctgatatgat 8188168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 619
Target Start/End: Complemental strand, 13520844 - 13520794
Alignment:
Q  569 aaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaa 619  Q
    ||||| |||||  ||||||||||||| |||||||||||||||| |||||||    
T  13520844 aaattataaaacccacattttggtcctcttggttttgctccgttagtcaaa 13520794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 628 - 665
Target Start/End: Complemental strand, 224596 - 224559
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatatga 665  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  224596 ctccgttagttttttaatgtctaaattttttgatatga 224559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 628 - 664
Target Start/End: Complemental strand, 21389149 - 21389113
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatatg 664  Q
    |||||||||||||||||||| |||||||||| |||||    
T  21389149 ctccgttagttttttaatgtctaaaattttttatatg 21389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 515 - 663
Target Start/End: Original strand, 6895 - 7042
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||   |||||||||| || |||||||||||||||| |    
T  6895 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaaccaacattttggttcctttggttttgctccgtcgg 6994  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatat 663  Q
    |||||||||| |||||||||||||||| ||| | |||| ||||||||||    
T  6995 tcaaattgat-ccctccgttagtttttcaatatctaaattttttgatat 7042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 509 - 627
Target Start/End: Complemental strand, 8312 - 8194
Alignment:
Q  509 aaaagacttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctc 608  Q
    ||||| |||||||| || ||||||||||||| ||||| |  |||||||||||| ||||| || | |||||||  |||||||||||||  | ||||| |||    
T  8312 aaaaggcttaattgaacttttggtcccctaagtaattctttgtttacattttggtcccataactcgtaaaatcaacattttggtccctctcgttttactc 8213  T
Q  609 cgtcagtcaaattgatccc 627  Q
    ||| |||||| ||||||||    
T  8212 cgttagtcaatttgatccc 8194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 9e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 515 - 619
Target Start/End: Original strand, 11722786 - 11722890
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  11722786 cttaattggacatttgatcctctaaataattatgtgtttacattttgatcccataaattgtaaaactcacattttggtcctcttggttttgctccgtcag 11722885  T
Q  615 tcaaa 619  Q
    |||||    
T  11722886 tcaaa 11722890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 614 - 661
Target Start/End: Complemental strand, 138223 - 138176
Alignment:
Q  614 gtcaaattgatcccctccgttagttttttaatgtttaaaatttttgat 661  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  138223 gtcaaattgatcccctccgttatttttttaatgtctaaactttttgat 138176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 614 - 661
Target Start/End: Complemental strand, 146244 - 146197
Alignment:
Q  614 gtcaaattgatcccctccgttagttttttaatgtttaaaatttttgat 661  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||||||    
T  146244 gtcaaattgatcccctccgttatttttttaatgtctaaactttttgat 146197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 619
Target Start/End: Complemental strand, 21777570 - 21777496
Alignment:
Q  545 tatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaa 619  Q
    |||| |||||||||||| ||||| || |||||||| ||||| ||  |||| |||||||||| |||||||||||||    
T  21777570 tatgagtttacattttggtcccataagttgtaaaactcacagttgagtcctcttggttttggtccgtcagtcaaa 21777496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 515 - 663
Target Start/End: Original strand, 9853567 - 9853715
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||| ||||| | |||  |||||||||||  ||||| |||||| ||||| ||||||||||| | | ||||||||| ||| ||||||||||||||||    
T  9853567 cttaattgaacattagctcctttaaataattatatgtttatattttggtcccataaattgtaaaactaatattttggtctcctgggttttgctccgtcag 9853666  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgatat 663  Q
    ||||||||||||||||||||||||||||||| | |||| ||||||||||    
T  9853667 tcaaattgatcccctccgttagttttttaatatctaaattttttgatat 9853715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 515 - 619
Target Start/End: Complemental strand, 9854995 - 9854891
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||| ||||||||||||| |||| ||||||||||||||    
T  9854995 cttaattggacatttggtcctctaaataattatgtgtttacattttggtcccataaattgtaaaatccacattttggtcctcttgattttgctccgtcag 9854896  T
Q  615 tcaaa 619  Q
    |||||    
T  9854895 tcaaa 9854891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 533 - 666
Target Start/End: Original strand, 42793717 - 42793850
Alignment:
Q  533 cccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccctccg 632  Q
    ||||||||||||||   ||||| |||||| ||||| ||||||||||||| |||||||||||||  | |||||||||||| |||||||  | ||||||| |    
T  42793717 cccctaaataattaccagtttatattttggtcccataaattgtaaaattaacattttggtccctcttgttttgctccgttagtcaaaaaggtcccctctg 42793816  T
Q  633 ttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||| ||||||||||| ||||| ||||||||||||    
T  42793817 ttaattttttaatgtctaaaacttttgatatgat 42793850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 529 - 665
Target Start/End: Original strand, 38697170 - 38697306
Alignment:
Q  529 tggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccc 628  Q
    ||||||| |||||||||||   ||||||||||| || || ||||| |||||   ||||||||||||| ||  ||||||||| |||||||||  | |||||    
T  38697170 tggtcccttaaataattatcaatttacattttggtctcataaattataaaaccaacattttggtcccttttattttgctccctcagtcaaaaaggtcccc 38697269  T
Q  629 tccgttagttttttaatgtttaaaatttttgatatga 665  Q
    ||||||| | ||||||||| ||||| |||||||||||    
T  38697270 tccgttactattttaatgtctaaaacttttgatatga 38697306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 661
Target Start/End: Complemental strand, 43203396 - 43203250
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcag 614  Q
    ||||||||||| ||||||||  |||||||||     ||| ||||||| ||||| || | |||||||  ||||||  |||||  |  ||||||||||||||    
T  43203396 cttaattggacttttggtccattaaataatttgttattttcattttggtcccataactcgtaaaatcaacatttccgtccctcttattttgctccgtcag 43203297  T
Q  615 tcaaattgatcccctccgttagttttttaatgtttaaaatttttgat 661  Q
    |||| ||| |||||||||||||||||||||||| |||| ||||||||    
T  43203296 tcaatttggtcccctccgttagttttttaatgtctaaattttttgat 43203250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 666
Target Start/End: Original strand, 31844427 - 31844519
Alignment:
Q  574 gtaaaattcacattttggtccccttggttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||| |||||||||||||  | |||||||||||| |||||| ||| ||||||||||| ||  |||||| | ||||||||||||| ||||    
T  31844427 gtaaaattaacattttggtccctcttgttttgctccgttagtcaatttggtcccctccgtttgtcctttaatttctaaaatttttgatttgat 31844519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 601 - 666
Target Start/End: Original strand, 24191463 - 24191528
Alignment:
Q  601 ttttgctccgtcagtcaaattgatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||| || | |||||||||||| |||||||||||| ||||||| |||| |||||||| ||||    
T  24191463 ttttgctctgttactcaaattgatccactccgttagtttgttaatgtctaaattttttgatttgat 24191528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 619
Target Start/End: Original strand, 38697880 - 38697972
Alignment:
Q  527 tttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccccttggttttgctccgtcagtcaaa 619  Q
    ||||||||||||| ||||| |   ||||||||||| | ||| || |||||||||  |||||||||||||  | |||||||||||| |||||||    
T  38697880 tttggtcccctaagtaattttctatttacattttggttccataacttgtaaaatcaacattttggtccctcttgttttgctccgttagtcaaa 38697972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 628 - 666
Target Start/End: Original strand, 16362529 - 16362567
Alignment:
Q  628 ctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  16362529 ctccgttagttttttaatgtctaatatttttgatatgat 16362567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 629 - 666
Target Start/End: Original strand, 34616245 - 34616282
Alignment:
Q  629 tccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  34616245 tccgttagttttttaatgtttaatatttttaatatgat 34616282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 595
Target Start/End: Original strand, 28291295 - 28291375
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccc 595  Q
    ||||||||||  ||||||||||||| |||||||  |||| ||||||| ||||| || | |||||||  |||||| ||||||    
T  28291295 cttaattggatttttggtcccctaagtaattatcagttttcattttggtcccataattcgtaaaatcaacatttcggtccc 28291375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 515 - 595
Target Start/End: Complemental strand, 28291481 - 28291401
Alignment:
Q  515 cttaattggacatttggtcccctaaataattatgcgtttacattttgatcccacaaattgtaaaattcacattttggtccc 595  Q
    ||||||||||  ||| |||||||||||||||||  |||| || |||| ||||| || | |||||||| |||||| ||||||    
T  28291481 cttaattggatttttagtcccctaaataattatcagttttcactttggtcccataactcgtaaaattaacatttcggtccc 28291401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 666
Target Start/End: Complemental strand, 36757232 - 36757188
Alignment:
Q  622 gatcccctccgttagttttttaatgtttaaaatttttgatatgat 666  Q
    ||||| |||| ||||||||||||||| |||| |||||||||||||    
T  36757232 gatcctctccattagttttttaatgtctaaattttttgatatgat 36757188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 607 - 647
Target Start/End: Complemental strand, 45396042 - 45396002
Alignment:
Q  607 tccgtcagtcaaattgatcccctccgttagttttttaatgt 647  Q
    |||||||||||||||| ||| |||||||||||| |||||||    
T  45396042 tccgtcagtcaaattggtccactccgttagtttcttaatgt 45396002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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