View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_23 (Length: 297)
Name: NF14917_low_23
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 33 - 281
Target Start/End: Original strand, 45738452 - 45738700
Alignment:
| Q |
33 |
gaccagaaacagccccacttttcatagtgttcccatccataatagaagcttccatttcaaccgtgcctttgttggtaagaacagaacctcttccagcgtt |
132 |
Q |
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| T |
45738452 |
gaccagaaacagcaccacatttcatagtgtttccatccataatagaagcttccatttcaaccgtgcctttgttggtaagaacagaacctcttccagcgtt |
45738551 |
T |
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| Q |
133 |
gaagtgtggaatattctccaactcacgaacctatgatcaatgattattatcagaatcacattcaaaacagaagaaagctatgaaacatggatgcatacac |
232 |
Q |
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| T |
45738552 |
gaagtgtggaatattctccaactcacgaacctatgaacaatgattattataagaatcacattcaaaacagaagaaagctatgaaacatggatgcatacac |
45738651 |
T |
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| Q |
233 |
aacacgacatgacactgacacgcctagactgataataatatgagaaaat |
281 |
Q |
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| T |
45738652 |
aacacgacatgacactgacacgcctagactgataataatatgagaaaat |
45738700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 45732982 - 45733170
Alignment:
| Q |
33 |
gaccagaaacagccccacttttcatagtgttcccatccataatagaagcttccatttcaaccgtgcctttgttggtaagaacagaacctcttccagcgtt |
132 |
Q |
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||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45732982 |
gaccagaaacagcaccacatttcatagtgtttccatccataatagaagcttccatttcaaccgtgcctttgttggtaagaacagaacctcttccagcgtt |
45733081 |
T |
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| Q |
133 |
gaagtgtggaatattctccaactcacgaacctatgatcaatgattattatcagaatcacattcaaaacagaagaaagctatgaaacatg |
221 |
Q |
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| T |
45733082 |
gaagtgtggaatattctccaactcacgaacctatgatcaatgattattataagaatcacattcaaaacagaagaaagctatgaaacatg |
45733170 |
T |
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