View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_24 (Length: 290)
Name: NF14917_low_24
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 41820594 - 41820335
Alignment:
| Q |
14 |
gcaaaggcacacagcagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaat |
113 |
Q |
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| T |
41820594 |
gcaaaggcacacagcagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaat |
41820495 |
T |
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| Q |
114 |
acatcagcacacacaccaaacttgattgtgtctctagggcatgttgggtttttggaggaaggtggatgatgagggtgcgagtggccgtgatctttgtgag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41820494 |
acatcagcacacacaccaaacttgattgtgtctctagggcatgttgggtttttggaggaaggtggatgatgagggtgtgagtggccgtgatctttgtgag |
41820395 |
T |
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| Q |
214 |
gtggtgggggacatggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggc |
273 |
Q |
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| T |
41820394 |
gtggtgggggacatggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggc |
41820335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 44829735 - 44829888
Alignment:
| Q |
14 |
gcaaaggcacacagcagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaat |
113 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44829735 |
gcaaaggcacacagcagcttcaagattagcaagatcatcaatgagagagcagcatggtgtctttggtggcttaccaagttcaacattaatcaaacccaat |
44829834 |
T |
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| Q |
114 |
acatcagcacacacaccaaacttgattgtgtctctagggcatgttgggtttttg |
167 |
Q |
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| T |
44829835 |
acatcagcacacacaccaaacttaattgtgtctctaggacaagttgggtgtttg |
44829888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 194 - 273
Target Start/End: Original strand, 44829888 - 44829967
Alignment:
| Q |
194 |
gtggccgtgatctttgtgaggtggtgggggacatggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggc |
273 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
44829888 |
gtggctgtgatctttgtgaggtggtgggggacatggaacatatgttgagcttaccacagtgaaaaataggatgttgaggc |
44829967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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