View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_27 (Length: 277)
Name: NF14917_low_27
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 5979130 - 5979317
Alignment:
| Q |
19 |
aatattgaagttattgataagaatatcattgatttttcttattcctctcaggtttcttcttcgtttggaaagtcttgtgtttcttcgtgctcgttgaaga |
118 |
Q |
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| T |
5979130 |
aatattgaagttattgataagaatatcattgatttttcttattcctctcaggtttcttcttcgtttggaaagtcttgtgtttcttcgtgctcgttgaaga |
5979229 |
T |
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| Q |
119 |
gaaagtgtagctctgataattttggcaatggaaagtgtggtagttcttctagccaatgtcattgttcaaagaagaggtatatatatgt |
206 |
Q |
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| T |
5979230 |
gaaagtgtggctctgataattttggcaatggaaagtgtggtagttcatctagccaatgtcattgttcaaagaagaggtatatatatgt |
5979317 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 39256104 - 39256018
Alignment:
| Q |
112 |
ttgaagagaaagtgtagctctgataattttggcaatggaaagtgtggtagttcttctagccaatgtcattgttcaaagaagaggtat |
198 |
Q |
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| T |
39256104 |
ttgaaaaggaagtgtagctctgaaactttgggttctggaaagtgtggtagttcttctagccgttgtcattgttccaaaaaaaggtat |
39256018 |
T |
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