View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_28 (Length: 268)
Name: NF14917_low_28
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 6374576 - 6374811
Alignment:
| Q |
19 |
atagcatttagtttgttattgttccatccatctacctgctaacgttctgttcgtgagacagatgaatcaattttgtagtaagagtcgtaaaagactttat |
118 |
Q |
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| T |
6374576 |
atagcatgtagtttgctattgttccatccatctacctgctaacgttctgttcgcgatacagatgaatcaattttgtagtaagagtcgtaaaagactttat |
6374675 |
T |
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| Q |
119 |
ggatgtctgtaaattcatgctgtctctttgtacatgttttacacgacaccatttgtgccgtctcttcgtaaactcatctctaatcaagatcatataatgt |
218 |
Q |
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| T |
6374676 |
agatgtctgtaaattcatgctgtctcttcgtacatgttttacacgacaccatttgtgccgtctcttcgtaaactcatctctaatcaagatcatataatgt |
6374775 |
T |
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| Q |
219 |
attaactatctatcactccactgctttttagttcat |
254 |
Q |
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| T |
6374776 |
attaactatctatcactctactgctttttagttcat |
6374811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 6369691 - 6369843
Alignment:
| Q |
19 |
atagcatttagtttgttattgttccatccatctacctgctaacgttctgttcgtgagacagatgaatcaattttgtagtaagagtcgtaaaagactttat |
118 |
Q |
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||||||| ||| | |||| |||| ||||||| ||| |||||| ||| | | ||||||||| |||||||||||||| |||||||||| ||||||| |||| |
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| T |
6369691 |
atagcatctagctagttactgttgcatccatatacatgctaaagtttggcttgtgagacagctgaatcaattttgtggtaagagtcgcaaaagacattat |
6369790 |
T |
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| Q |
119 |
ggatgtctgtaaattcatgctgtctctttgtacatgttttacacgacaccatt |
171 |
Q |
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| T |
6369791 |
gcctgtcagtaaattcatgctgtctcttcgtatatgttttgcacgacgccatt |
6369843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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