View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_29 (Length: 258)
Name: NF14917_low_29
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_29 |
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| [»] scaffold0592 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 43446597 - 43446839
Alignment:
| Q |
1 |
tgttttagttcttacctttcactcaactctgtgagttcatggaacttttaaggtttttaaagagtcgtgttccaatcttaccttcctcgcaactccctca |
100 |
Q |
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| T |
43446597 |
tgtttcagttcttacctttcactcaactctgtgagttcatggaactttcaaggtttttaaagagtcgtgttccaatcttaccttcctggcaactccctca |
43446696 |
T |
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| Q |
101 |
acatgcgagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaactatcttaacatgcgagttcatggaacatttt |
200 |
Q |
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| T |
43446697 |
acatgcgagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaactatcttaacatgcgagttcatggaacatttt |
43446796 |
T |
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| Q |
201 |
gtacaaatggtacttccataaaactcatcaatgacattttcat |
243 |
Q |
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| T |
43446797 |
gtacaaatggtacttccataaaactcatcaatggcattttcat |
43446839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 53 - 199
Target Start/End: Original strand, 43446354 - 43446501
Alignment:
| Q |
53 |
gtttttaaagagtcgtgttccaa-tcttaccttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttcagg |
151 |
Q |
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||||||||||||||||||| || |||||||||||| ||||| || ||||||||| |||||||||||| ||| ||||||||||||| |||| ||| || |
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| T |
43446354 |
gtttttaaagagtcgtgtttcaggtcttaccttccttgcaacaccttcaacatgcaagttcatggaacattttgaggtttttaaagacccatgttttaga |
43446453 |
T |
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| Q |
152 |
tcttaccttcctcgcaactatcttaacatgcgagttcatggaacattt |
199 |
Q |
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| T |
43446454 |
acttaccttcctcgcaactcccctaacatgcgagttcatggaacattt |
43446501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 199
Target Start/End: Original strand, 43446410 - 43446577
Alignment:
| Q |
34 |
agttcatggaac-ttttaaggtttttaaagagtcgtgttcca-atcttaccttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggttt |
131 |
Q |
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| T |
43446410 |
agttcatggaacattttgaggtttttaaagacccatgttttagaacttaccttcctcgcaactcccctaacatgcgagttcatggaacatttcaaggttt |
43446509 |
T |
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| Q |
132 |
ttaaagagccatatttcaggtcttaccttcctcgcaactatcttaacatgcgagttcatggaacattt |
199 |
Q |
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| T |
43446510 |
ttaaagagtcacatttcaggtagtgtcttcctcgcagctcccttaagaggagatttcatggaacattt |
43446577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 43446307 - 43446427
Alignment:
| Q |
81 |
ccttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaactatctt-aaca |
179 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||| | |||||||||||| | | ||||||||||||||||||| ||||| | ||| |||| |
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| T |
43446307 |
ccttcctcgcaactttttcaacatgcgagttcatggaatatttcgatgtttttaaagagtcgtgtttcaggtcttaccttccttgcaac-accttcaaca |
43446405 |
T |
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| Q |
180 |
tgcgagttcatggaacattttg |
201 |
Q |
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||| |||||||||||||||||| |
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| T |
43446406 |
tgcaagttcatggaacattttg |
43446427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 43446536 - 43446614
Alignment:
| Q |
82 |
cttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttacctt |
160 |
Q |
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| T |
43446536 |
cttcctcgcagctcccttaagaggagatttcatggaacatttcaaggtttttaaagagccatgtttcagttcttacctt |
43446614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 43446271 - 43446349
Alignment:
| Q |
121 |
tttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaactatcttaacatgcgagttcatggaacattt |
199 |
Q |
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| T |
43446271 |
tttcacggattttaaaaagtcatgttgcaggacttgccttcctcgcaactttttcaacatgcgagttcatggaatattt |
43446349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: scaffold0592
Description:
Target: scaffold0592; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 3251 - 3159
Alignment:
| Q |
77 |
cttaccttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaact |
170 |
Q |
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| T |
3251 |
cttacctttctcgcaactcctttaacaagtgagtttgtggaacttt-caaggattttaaagagccatgtttcagaacataccttcctcgcaact |
3159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 3082 - 3008
Alignment:
| Q |
95 |
ccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaact |
170 |
Q |
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| T |
3082 |
cccttaacatgcgagttcatggaactttt-gaggtttttaaaatgtcatgtttcaagacttaccttcctcgcaact |
3008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 3070 - 3004
Alignment:
| Q |
33 |
gagttcatggaacttttaaggtttttaaagagtcgtgttccaa-tcttaccttcctcgcaactccct |
98 |
Q |
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| T |
3070 |
gagttcatggaacttttgaggtttttaaaatgtcatgtttcaagacttaccttcctcgcaactccct |
3004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 3283 - 3234
Alignment:
| Q |
121 |
tttcaaggtttttaaagagccatatttcaggtcttaccttcctcgcaact |
170 |
Q |
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| T |
3283 |
tttcagggtttttaaagagccatgtttcaggacttacctttctcgcaact |
3234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 3401 - 3310
Alignment:
| Q |
79 |
taccttcctcgcaactccctcaacatgcgagttcatggaacttttcaaggtttttaaagagccatatttca-ggtcttaccttcctcgcaact |
170 |
Q |
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|||||||||| ||||||| | | || |||||||||||||| |||| | |||||||||||||||| || || || |||||||||||| ||||| |
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| T |
3401 |
taccttcctcacaactcctttaccagacgagttcatggaac-tttcgaagtttttaaagagccatgttacagggacttaccttcctctcaact |
3310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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