View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14917_low_3 (Length: 675)

Name: NF14917_low_3
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14917_low_3
NF14917_low_3
[»] chr2 (13 HSPs)
chr2 (156-659)||(21432309-21432810)
chr2 (304-659)||(27099619-27099958)
chr2 (478-659)||(27151439-27151622)
chr2 (15-113)||(21432197-21432295)
chr2 (516-659)||(26988599-26988742)
chr2 (461-659)||(27076517-27076727)
chr2 (516-659)||(27027917-27028060)
chr2 (98-177)||(27100069-27100147)
chr2 (461-506)||(27027839-27027884)
chr2 (461-506)||(26988519-26988564)
chr2 (200-258)||(27099973-27100029)
chr2 (396-443)||(27151383-27151430)
chr2 (299-341)||(26988428-26988470)
[»] chr6 (3 HSPs)
chr6 (516-659)||(34690675-34690818)
chr6 (461-506)||(34690595-34690640)
chr6 (299-341)||(34690504-34690546)


Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 156 - 659
Target Start/End: Original strand, 21432309 - 21432810
Alignment:
Q  156 aagggagatggagtatttgaactg--agagttagaaataaggatttggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatag 253  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21432309 aagggagatggagtatttgaactgtgagagttagaaataaggatttggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatag 21432408  T
Q  254 ttgatgagcttgaagctgtaactaactaaatagtgaagagaagaggttgtaagtcagaattggaacactctagaaattagcactattgtatcattcttgg 353  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21432409 ttgatgagcttgaagctgtaactaactaaatagtgaatagaagaggttgtaagtcagaattggaacactctagaacttagcactattgtatcattcttgg 21432508  T
Q  354 gagagtatattgggaacttgcaaatttaaccctattgtatcgattttgctctcaggtgttgcaaatatcactataaatcctatttttattcgnnnnnnnn 453  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  21432509 gagag--tattgggaacttgcaaatttaaccctattgtatcgattttgctctcaggtgttgcaaatatcactataaatcctatttttattcgtttttttt 21432606  T
Q  454 cttttctcctttgaactcttgttgtatcctatcatacacacaacccaactattctacatgatttaaatatggagatttttgtatgctcagggactaagac 553  Q
     | |||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21432607 ttcttctcctttgaactc--gttgtatcctatcatacacacaatccaactattctacatgatttaaatatggagatttttgtatgctcagggactaagac 21432704  T
Q  554 ttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtagaaagctttgcttggttctggacttagatcacacactgct 653  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21432705 ttcatgaggaggaaatttctagagtgcgaagcttacacacacggaatttattaaaccgtagaaagctttgcttggttctggacttagatcacacactgct 21432804  T
Q  654 aaatac 659  Q
    ||||||    
T  21432805 aaatac 21432810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 304 - 659
Target Start/End: Complemental strand, 27099958 - 27099619
Alignment:
Q  304 aagtcagaattggaacactctagaaattagcactattgtatcattcttgggagagtatattgggaacttgcaaatttaaccctattgtatcgattttgct 403  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||| | |  ||||||              |||||||||| |||||||||    
T  27099958 aagtcagaattgggacactctagaatttagccctattgtatcattcttgggagattct--tgggaaa-------------cctattgtattgattttgct 27099874  T
Q  404 ctcaggtgttgcaaatatcactataaatcctatttttattcgnnnnnnnncttttctcctttgaactcttgttgtatcctatcatacacacaacccaact 503  Q
    ||||||| |||||||||||||||||||||||||||||||||          | ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  27099873 ctcaggtcttgcaaatatcactataaatcctatttttattcaatttttta-tcttctcctttgaacgcttgttgtatcctatcatacacacaatccaact 27099775  T
Q  504 attctacatgatttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaattta 603  Q
    |||||||||||||||||||||||||||||  |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  27099774 attctacatgatttaaatatggagattttcatatgttcagggactaagacttcatgatgaggaaatttctagagtgcgcagcttacacacacggaattta 27099675  T
Q  604 ttaaactgtagaaagctttgcttggttctggacttagatcacacactgctaaatac 659  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||    
T  27099674 ttaaaccgtagaaagctttgcttggttctggacttagatcacacacagataaatac 27099619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 478 - 659
Target Start/End: Original strand, 27151439 - 27151622
Alignment:
Q  478 tatcctatcatacacacaacccaactattctacatgatttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagag 577  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |||||    
T  27151439 tatcctatcatacacacaatccaactattctacatgatttaaatatggagatttttgtatgttcagggactaagacttcacgatgaggaaatttgtagag 27151538  T
Q  578 tgcgcagcttacacacacggaatttattaaactgtagaaagctttgcttgg---ttctggacttagatcacacactgctaaatac 659  Q
    || |||||||| |||||| ||||||| |||||  |||||||||||||||||   |||||| | ||||||||||||||||||||||    
T  27151539 tgtgcagcttagacacacagaattta-taaaccatagaaagctttgcttggttattctgggcctagatcacacactgctaaatac 27151622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 21432197 - 21432295
Alignment:
Q  15 atgaatgatgtcgtaagatacgaccttatttcagcaagtttgttctactattttttatgatatcctcatattttgcagaaactcggaagaacacctaga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21432197 atgaatgatgtcgtaagatacgaccttatttcagcaagtttgttctactattttttatgatatcctcatattttgcagaaactcggaagaacacctaga 21432295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 516 - 659
Target Start/End: Original strand, 26988599 - 26988742
Alignment:
Q  516 ttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtaga 615  Q
    ||||||||||| ||||||||||| ||||||||||| |||| | ||  |||||||||||||||||||||||  | ||     ||||||||||||  |||||    
T  26988599 ttaaatatggaaatttttgtatgttcagggactaaaacttgatgataaggaaatttctagagtgcgcagcagagacgtgaagaatttattaaatcgtaga 26988698  T
Q  616 aagctttgcttggttctggacttagatcacacactgctaaatac 659  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  26988699 aagctttgcttggttctagacttagatcacacactgctaaatac 26988742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 461 - 659
Target Start/End: Complemental strand, 27076727 - 27076517
Alignment:
Q  461 cctttgaactcttgttgtatcctatcatacacacaacccaactatt----ctacatgattta--------aatatggagatttttgtatgctcagggact 548  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    || ||| |||||        ||||||||||||||||| |  |||||||||    
T  27076727 cctttgaattcttgttgtatcctatcatacacacaacccaattatttattctgcataatttagccaaataaatatggagatttttgtgttttcagggact 27076628  T
Q  549 aagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtagaaagctttgcttggttctggacttagatcacaca 648  Q
    || |||| | ||  |||||||||||||||||||| || || ||     ||||||||||||  ||||||||||||| |||||||| ||| |||||||||||    
T  27076627 aaaacttgatgataaggaaatttctagagtgcgcggcatagacgtgaagaatttattaaatcgtagaaagctttgtttggttctagacctagatcacaca 27076528  T
Q  649 ctgctaaatac 659  Q
    |||||||||||    
T  27076527 ctgctaaatac 27076517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 516 - 659
Target Start/End: Original strand, 27027917 - 27028060
Alignment:
Q  516 ttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtaga 615  Q
    ||||||||||||||||||||||  ||||||||||| |||| | ||  ||||||||||||||||||||  | || ||     ||||||||||||  |||||    
T  27027917 ttaaatatggagatttttgtattttcagggactaaaacttgatgataaggaaatttctagagtgcgcgacatagacgtgaagaatttattaaatcgtaga 27028016  T
Q  616 aagctttgcttggttctggacttagatcacacactgctaaatac 659  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  27028017 aagctttgtttggttctggacctagatcacacactgctaaatac 27028060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 27100147 - 27100069
Alignment:
Q  98 cggaagaacacctagaccactggagcaaggtgttgttattgttgtgtgaatttgcagtaagggagatggagtatttgaac 177  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||    
T  27100147 cggaagaacacctagaccactggagcaaggtgttg-tattgtcgtgtgaatttgcagcaatggagatggagtatttgaac 27100069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 461 - 506
Target Start/End: Original strand, 27027839 - 27027884
Alignment:
Q  461 cctttgaactcttgttgtatcctatcatacacacaacccaactatt 506  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  27027839 cctttgaattcttgttgtatcctatcatacacacaacccaactatt 27027884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 506
Target Start/End: Original strand, 26988519 - 26988564
Alignment:
Q  461 cctttgaactcttgttgtatcctatcatacacacaacccaactatt 506  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||    
T  26988519 cctttgaattcttgttgtatcctatcatatacacaacccaactatt 26988564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 27100029 - 27099973
Alignment:
Q  200 ggtgctgaattgcttaagagattagctctggatcgagggaaatgtagttaatagttgat 258  Q
    ||||||||||| |||||||||||||||||  |  |||||||||||| ||||||||||||    
T  27100029 ggtgctgaattacttaagagattagctct--agggagggaaatgtaattaatagttgat 27099973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 27151383 - 27151430
Alignment:
Q  396 attttgctctcaggtgttgcaaatatcactataaatcctatttttatt 443  Q
    ||||| ||||||||| ||| |||||| |||||||||||||||||||||    
T  27151383 attttactctcaggtcttggaaatattactataaatcctatttttatt 27151430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 26988428 - 26988470
Alignment:
Q  299 gttgtaagtcagaattggaacactctagaaattagcactattg 341  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||    
T  26988428 gttgtaagtcagaattgggacaatctagaatttagcactattg 26988470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 516 - 659
Target Start/End: Original strand, 34690675 - 34690818
Alignment:
Q  516 ttaaatatggagatttttgtatgctcagggactaagacttcaggaggaggaaatttctagagtgcgcagcttacacacacggaatttattaaactgtaga 615  Q
    ||||||||||| ||||||||||| ||||||||||| |||| | ||  |||||||||||||||||||||||  | ||     ||||||||||||  |||||    
T  34690675 ttaaatatggaaatttttgtatgttcagggactaaaacttgatgataaggaaatttctagagtgcgcagcagagacgtgaagaatttattaaatcgtaga 34690774  T
Q  616 aagctttgcttggttctggacttagatcacacactgctaaatac 659  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  34690775 aagctttgcttggttcttgacttagatcacacactgctaaatac 34690818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 506
Target Start/End: Original strand, 34690595 - 34690640
Alignment:
Q  461 cctttgaactcttgttgtatcctatcatacacacaacccaactatt 506  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||    
T  34690595 cctttgaattcttgttgtatcctatcatatacacaacccaactatt 34690640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 34690504 - 34690546
Alignment:
Q  299 gttgtaagtcagaattggaacactctagaaattagcactattg 341  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||    
T  34690504 gttgtaagtcagaattgggacagtctagaatttagcactattg 34690546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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