View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_30 (Length: 255)
Name: NF14917_low_30
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 4285312 - 4285109
Alignment:
| Q |
8 |
gacatcatcacatacatcagaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttg |
107 |
Q |
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| T |
4285312 |
gacatcatcacatacttcagaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttg |
4285213 |
T |
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| Q |
108 |
aatatttcacatgatcaagctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttag |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
4285212 |
aatatttcacatgatcaagctactgttttggctcttcaagttactgtttttccaaactatggattttcaatgggcattacttcacatcatgctgttttag |
4285113 |
T |
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| Q |
199 |
atgg |
202 |
Q |
| |
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|||| |
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| T |
4285112 |
atgg |
4285109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 4290023 - 4289804
Alignment:
| Q |
27 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
126 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4290023 |
gaatctcatgctgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4289924 |
T |
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| Q |
127 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
217 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289923 |
cttctgttttggctcttcaagttaccatttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4289824 |
T |
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| Q |
218 |
ttttatcaaatcttgggctt |
237 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4289823 |
ttttatcaaatcttgggctt |
4289804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 4260154 - 4260373
Alignment:
| Q |
27 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
126 |
Q |
| |
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||||||||||||| |||||||||||| |||| |||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
4260154 |
gaatctcatgctgatttcaatcatttctctggtaagaatctttctgaagctacacagattcatgattttttacctaacttgaatatttctcatgatcaag |
4260253 |
T |
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| Q |
127 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
217 |
Q |
| |
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|| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260254 |
cttcttttttggctcttcaagttactttttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4260353 |
T |
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| Q |
218 |
ttttatcaaatcttgggctt |
237 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4260354 |
ttttatcaaatcttgggctt |
4260373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 4298607 - 4298388
Alignment:
| Q |
27 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
126 |
Q |
| |
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|||||| || ||| ||||||| || |||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4298607 |
gaatctgattctgatttcaattatctatctggtaagaatccttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4298508 |
T |
|
| Q |
127 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
217 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298507 |
cttatgttttggctcttcaagttaccgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4298408 |
T |
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| Q |
218 |
ttttatcaaatcttgggctt |
237 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4298407 |
ttttatcaaatcttgggctt |
4298388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 4265700 - 4265919
Alignment:
| Q |
27 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
126 |
Q |
| |
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|||||| |||||| |||||||||| | || | |||||||||| | ||||| | |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4265700 |
gaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4265799 |
T |
|
| Q |
127 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
217 |
Q |
| |
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|| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265800 |
cttctattttggctcttcaagttactctttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttc |
4265899 |
T |
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| Q |
218 |
ttttatcaaatcttgggctt |
237 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4265900 |
ttttatcaaatcttgggctt |
4265919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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