View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_37 (Length: 237)
Name: NF14917_low_37
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1293427 - 1293206
Alignment:
| Q |
1 |
gcgtcagagtttcttctctcgttgccgtcgtggttgaagatcgggaaaatgtcgttgcggcggtgattgtgaaaagcgacgaattcgaaatcgtcgttgt |
100 |
Q |
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| T |
1293427 |
gcgtcagagtttcttctctcgttgccgtcgtggttgaagatcgggaaaacgtcgttgcggcggtgattgtgaaaagcgacgaattcgaaatcgtcgttgt |
1293328 |
T |
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| Q |
101 |
cgttttgagtgtttgaagtgtcgttttcattagtgactttttgaacgacgtcgtttatgttatttgaagaataagtactgaaacttggacacaaaaatga |
200 |
Q |
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| T |
1293327 |
cgttttgagtgtttgaagtgtcgttttcattagtgactttttgaacgacgtcgtttatgttatttgaagaataagtactgaaacttggacacaaaaatga |
1293228 |
T |
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| Q |
201 |
gtccattgttgaagaagtttct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
1293227 |
gtccattgttgaagaagtttct |
1293206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 1303943 - 1303798
Alignment:
| Q |
71 |
gaaaagcgacgaattcgaaatcgtcgttgtcgttttgagtgtttgaagtgtcgttttcattagtgactttttgaacgacgtcgtttatgttatttgaaga |
170 |
Q |
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|||| ||||||||||||||||||||||| ||||| || ||| |||||||||||||||| |||| |||| ||||||||||||||||||| ||||| |
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| T |
1303943 |
gaaacgcgacgaattcgaaatcgtcgtt------ttgagagtgtgagttgtcgttttcattagtaacttgttgagcgacgtcgtttatgttattagaaga |
1303850 |
T |
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| Q |
171 |
ataagtactgaaacttggacacaaaaatgagtccattgttgaagaagtttct |
222 |
Q |
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||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1303849 |
gtaaacgctgaaacttggacacaaaaaagagtccattgttgaagaagtttct |
1303798 |
T |
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