View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_4 (Length: 637)
Name: NF14917_low_4
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 116 - 625
Target Start/End: Original strand, 36753578 - 36754087
Alignment:
| Q |
116 |
atgcttgtgaatataatagagaatattatatatgcttaatataattaagcaaaaatgataactgagttgtcatctaattccattaattaatgatagcaga |
215 |
Q |
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| T |
36753578 |
atgcttgtgaatataatagagaatattatatatgcttaatataatcaagcaaaaatgataactgagttgtcatctaattccattaattaatgatagcaga |
36753677 |
T |
|
| Q |
216 |
atatcaaattaattaaattaaatttgttttgtttgacttatacttagtgataattgagcagacacattaatgaaaattgacttaattgataagaagttga |
315 |
Q |
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| T |
36753678 |
atatcaaattaattaaattaaatttgttttgtttgacttatacttaatgataagtgagcaaacacatcaataaaagttgactcaattgataaaaagttga |
36753777 |
T |
|
| Q |
316 |
ctcactcgttgtcgatatgaaagacatctttaggtatctctatcaacttcaataatgtaaaattcgtagtggagatggttaatggatgaaatatatgtta |
415 |
Q |
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| T |
36753778 |
ctcgctcattgtcgatatgaaagacatctttaggtgtctctatcaactcctataatgtgaaattcgtagtggagatagttaatggatgaaatatatgtta |
36753877 |
T |
|
| Q |
416 |
ggttaacaaaaacattgaaatatgttgcatgaaagcaaacatgataacatagataaattgtattggacgacttaatggagaggattgcaggaaccatatg |
515 |
Q |
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| T |
36753878 |
ggttaacaaaaacattgaaatatgttgcatgaaagcaaacattataacatagataaattgtattggacgacttaatggagaggattgcaggaaccatatg |
36753977 |
T |
|
| Q |
516 |
tctttatttggccaacaatgtgatatatcacatcatggacttcaaatcggaggtcaatatattcattgaagtccttgatgaacaagttgtaattgaatca |
615 |
Q |
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| T |
36753978 |
tctttatttggccaacaatgtgatatatcacatcatggacttcaaatcggaggtcaatatattcattgaagtccttgatgaacaagttgtaattgaatca |
36754077 |
T |
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| Q |
616 |
aaggttgtac |
625 |
Q |
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| T |
36754078 |
aaggttgtac |
36754087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 36753448 - 36753565
Alignment:
| Q |
18 |
ggtaaatgatccaatggttgacaatgatgtttcttatgctaaatacatggtcacaaattagttaatcaatgaagtgattagtaccacaaatatttcatat |
117 |
Q |
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| T |
36753448 |
ggtaaatgatccaatggttgacaatgatgtttcttatgctaaatacatggtcacaaattagttaatcaatgaagtgattagtaccacaaatatttcatat |
36753547 |
T |
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| Q |
118 |
gcttgtgaatataataga |
135 |
Q |
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| T |
36753548 |
gcttgtgaatataataga |
36753565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 36783569 - 36783704
Alignment:
| Q |
20 |
taaatgatccaatggttgacaatgatgtttcttatgctaaatacatggtcacaaattagttaatca-atgaagtgattag-taccacaaatatttcatat |
117 |
Q |
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| T |
36783569 |
taaatgattcaattgttgacaatgatgtttattatgctaaatacatggtcactgatttgtttatcagatcaagtgattagttaccacaaatttttcatat |
36783668 |
T |
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| Q |
118 |
gcttgtgaat---ataatagagaatattatatatgc |
150 |
Q |
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| T |
36783669 |
gcttgtgactataataatagagaatatgatatatgc |
36783704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 402 - 485
Target Start/End: Original strand, 36766986 - 36767069
Alignment:
| Q |
402 |
tgaaatatatgttaggttaacaaaaacattgaaatatgttgcatgaaagcaaacatgataacatagataaattgtattggacga |
485 |
Q |
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| T |
36766986 |
tgaaatatatgttaggtcaacagaagcatggaaatacgttgcatgagagcaaacatgataacatggataaattgtattggacga |
36767069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 36791702 - 36791878
Alignment:
| Q |
20 |
taaatgatccaatggttgacaatgatgtt----tcttatgctaaatacatggtcacaaattagttaatca-atgaagtgattagt-accacaaatatttc |
113 |
Q |
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|||||||| || | ||||||||||||||| | ||||||||||||||||||||| ||| ||| |||| || ||||||||||| |||||| || ||| |
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| T |
36791702 |
taaatgattcagttgttgacaatgatgttaatttattatgctaaatacatggtcactgatttgtttatcagatcaagtgattagttaccacacatttttt |
36791801 |
T |
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| Q |
114 |
atatgcttgtgaatataatagagaatattatatatgcttaatataattaagcaaaaatgataactgagttgtcatctaattc |
195 |
Q |
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| T |
36791802 |
atatgcttgtgagtatagtagagaatatgatatatgcttaattta-----gcaaaaatgatagctgacttgtcatccaattc |
36791878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 36771041 - 36771082
Alignment:
| Q |
29 |
caatggttgacaatgatgtttcttatgctaaatacatggtca |
70 |
Q |
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| T |
36771041 |
caattgttgacaatgatgtttattatactaaatacatggtca |
36771082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 319
Target Start/End: Original strand, 107487 - 107522
Alignment:
| Q |
284 |
aatgaaaattgacttaattgataagaagttgactca |
319 |
Q |
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| T |
107487 |
aatgaaagttgacttaattgataagaagttgactca |
107522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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