View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14917_low_5 (Length: 616)

Name: NF14917_low_5
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14917_low_5
NF14917_low_5
[»] chr2 (6 HSPs)
chr2 (12-595)||(43874841-43875419)
chr2 (23-533)||(43867171-43867681)
chr2 (12-503)||(43863685-43864160)
chr2 (361-485)||(38989109-38989233)
chr2 (117-171)||(38989423-38989477)
chr2 (29-74)||(38989526-38989571)
[»] chr4 (3 HSPs)
chr4 (361-528)||(52186779-52186946)
chr4 (117-172)||(52187136-52187191)
chr4 (415-455)||(35968336-35968376)
[»] scaffold0438 (1 HSPs)
scaffold0438 (379-485)||(5312-5418)
[»] chr3 (15 HSPs)
chr3 (358-492)||(476027-476161)
chr3 (358-468)||(480963-481073)
chr3 (362-531)||(778167-778336)
chr3 (379-485)||(1304694-1304800)
chr3 (379-478)||(1186233-1186332)
chr3 (379-478)||(1204297-1204396)
chr3 (29-171)||(777834-777976)
chr3 (379-441)||(5361015-5361077)
chr3 (363-444)||(13490896-13490977)
chr3 (370-443)||(7125963-7126036)
chr3 (118-170)||(1186544-1186596)
chr3 (118-170)||(1204608-1204660)
chr3 (118-170)||(1304430-1304482)
chr3 (122-162)||(7033517-7033557)
chr3 (384-444)||(25601743-25601803)
[»] chr5 (1 HSPs)
chr5 (379-451)||(33958061-33958133)
[»] chr7 (4 HSPs)
chr7 (384-444)||(6844163-6844223)
chr7 (392-447)||(32413657-32413712)
chr7 (401-444)||(9235846-9235889)
chr7 (370-444)||(6889182-6889256)
[»] chr6 (6 HSPs)
chr6 (392-444)||(7115536-7115588)
chr6 (392-444)||(7120608-7120660)
chr6 (392-444)||(7124012-7124064)
chr6 (392-444)||(7140726-7140778)
chr6 (121-161)||(7175105-7175145)
chr6 (392-444)||(8680340-8680392)
[»] chr1 (1 HSPs)
chr1 (414-446)||(42602903-42602935)


Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 12 - 595
Target Start/End: Original strand, 43874841 - 43875419
Alignment:
Q  12 catcatcatttcgatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattcaannnnnnnggaaatatttgtatccgaccaaacaatat 111  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  43874841 catcatcacttcaatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattcaatttttttggaaatatttgtatccgaccaaacaatat 43874940  T
Q  112 atcgtaaccagaaagattaagagaagttaatgtgtgacatgaaaagaagcaagagggaaagaggtcaatacaacaagggatatccattagtaagtgttgg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43874941 atcgtaaccagaaagattaagagaagttaatgtgtgacatgaaaagaagcaagagggaaagaggtcaatacaacaagggatatccattagtaagtgttgg 43875040  T
Q  212 atgttgtgtgtgatagcatattttataataatttggaatatacttggctccatgtaatatgggcagtcaacatcgagagtgtgtatagtggttgagccat 311  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  43875041 atattgtgtgtgatagcatattttataataatttggaatatacttggctcaatgtaatatcggcagtcaacatcgag--tgtgtatagtggttgagccat 43875138  T
Q  312 cgcaaagagataaaaattgagacaggaatacgctgaaagtttccttggtcctaaagtatgaagaacataatgtaagagtgggaagactcttccaaagatt 411  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  43875139 cgcaaagagataaaaattgagacaggaatacactgaaagtttccttggtcctaaagtatgaa---cataatgtaagagtgggaagactcttccaaagatt 43875235  T
Q  412 gatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgtttaagaaggacactatgtgaatgagaatacaatcaatcaagttactgataatg 511  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43875236 gatccatcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggacactatgtgaatgagaatacaatcgatcaagttactgataatg 43875335  T
Q  512 tcttcatttttgttgtccttattatgtctcaccatattcttgtaaacaaacaattctacaagcaaatggaacaagtattaggag 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43875336 tcttcatttttgttgtccttattatgtctcaccatattcttgtaaacaaacaattctacaagcaaatggaacaagtattaggag 43875419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 23 - 533
Target Start/End: Original strand, 43867171 - 43867681
Alignment:
Q  23 cgatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattcaannnnnnnggaaatatttgtatccgaccaaacaatatatcgtaaccag 122  Q
    ||||| |||| || |||||||||||||||||||||||||| ||||| ||| ||       ||||||||| ||||| ||||||||||||||||||||||||    
T  43867171 cgatgaaaggaaaagtactttaaagacaagctggttaatgctggcagatttaaattttttggaaatattggtatctgaccaaacaatatatcgtaaccag 43867270  T
Q  123 aaagattaagagaagttaatgtgtgacatgaaaagaagcaagagggaaagaggtcaatacaacaagggatatccattagtaagtgttggatgttgtgtgt 222  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||  ||||| |     
T  43867271 aaagattaagagacgttaatgtgtgacacgaaaagaagcaagagggaaagaggtcaatacgacaagggaaattcattagtaagtgttggacattgtggga 43867370  T
Q  223 gatagcatattttataataatttggaatatacttggctccatgtaatatgggcagtcaacatcgagagtgtgtatagtggttgagccatcgcaaagagat 322  Q
     ||||| ||||||||||| |||||||| |  || ||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  43867371 aatagcgtattttataatcatttggaacaggctaggctccaagtaatataggcagtgaacatcgagagtgtgtatagtggttgagccatcgcgaagagat 43867470  T
Q  323 aaaaattgagacaggaatacgctgaaagtttccttggtcctaaagtatgaagaacataatgtaagagtgggaagactcttccaaagattgatccatcttt 422  Q
    ||||| |||||||||||| ||   ||| ||| || |||||||||||  ||||||| |||||||| ||| ||||||| |||||| ||| ||||||||||||    
T  43867471 aaaaagtgagacaggaattcggctaaacttttctcggtcctaaagttcgaagaacttaatgtaatagtaggaagacccttccagagagtgatccatcttt 43867570  T
Q  423 tggacaaaatgcaagtttgaacggcctcttttgcgtttaagaaggacactatgtgaatgagaatacaatcaatcaagttactgataatgtcttcattttt 522  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||| || ||||||||||||||||||| |||||||||||||||||||||| ||||     
T  43867571 tggacaaaatgcaagtttgagcggcctcttttgcgttcaaaaaggacagtacgtgaatgagaatacaatcagtcaagttactgataatgtcttcgttttc 43867670  T
Q  523 gttgtccttat 533  Q
    ||||| |||||    
T  43867671 gttgtgcttat 43867681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 503
Target Start/End: Original strand, 43863685 - 43864160
Alignment:
Q  12 catcatcatttcgatgcaaggcaatgtactttaaagacaagctggttaatgttggcaaattcaannnnnnnggaaatatttgtatccgaccaaacaatat 111  Q
    |||||||| | ||||| |||| || |||||||||||||||| ||||||||| ||||||||||||       ||||||||| ||||| |||||||||||||    
T  43863685 catcatcactgcgatgaaaggaaaagtactttaaagacaaggtggttaatgctggcaaattcaaatgttttggaaatattggtatctgaccaaacaatat 43863784  T
Q  112 atcgtaaccagaaagattaagagaa-gttaatgtgtgacatgaaaagaagcaagagggaaagaggtcaatacaacaagggatatccattagtaagtgttg 210  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||||||||      | ||||||||| || |||||||||||||      
T  43863785 atcgtaaccagaaagataaagagaccgttaatgtgtgacatgaaaagaaggaagagggaaagag------aaaacaagggaaattcattagtaagtgt-- 43863876  T
Q  211 gatgttgtgtgtgatagcatattttataataatttggaatatacttggctccatgtaatatgggcagtcaacatcgagagtgtgtatagtggttgagcca 310  Q
              |  ||| | ||||||||||| |||| |||||  |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  43863877 ----------gaaataacgtattttataatcattttgaataggcttggctccaaggaatatgggcagtaaacatcgagagtgtgtatagtggttgagcca 43863966  T
Q  311 tcgcaaagagataaaaattgagacaggaatacgctgaaagtttccttggtcctaaagtatgaagaacataatgtaa-gagtgggaagactcttccaaaga 409  Q
    |||| ||||||||||||||||||||| ||| |||| ||| |||||||||||||||||| |||||||| ||||||||  ||| ||||||||||||||||||    
T  43863967 tcgcgaagagataaaaattgagacagaaattcgcttaaactttccttggtcctaaagtttgaagaacttaatgtaattagtaggaagactcttccaaaga 43864066  T
Q  410 ttgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgtttaagaaggacactatgtgaatgagaatacaatcaatcaagttac 503  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| || || ||||||| ||||||||||||||||||||| || |||||||    
T  43864067 ttgatccatcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaatgagaatacaatcgataaagttac 43864160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 361 - 485
Target Start/End: Complemental strand, 38989233 - 38989109
Alignment:
Q  361 cctaaagtatgaagaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttt 460  Q
    |||| |||||||||| |  | ||||| ||||| |||||||||||| ||| ||||||||||||||||||||| ||| |||||||| |||| | ||||||||    
T  38989233 cctagagtatgaagatctaagtgtaatagtggaaagactcttccagagaatgatccatcttttggacaaaacgcatgtttgaacagcctgtattgcgttt 38989134  T
Q  461 aagaaggacactatgtgaatgagaa 485  Q
    |  ||||||| |||||||| |||||    
T  38989133 agaaaggacagtatgtgaaggagaa 38989109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 38989477 - 38989423
Alignment:
Q  117 aaccagaaagattaagagaagttaatgtgtgacatgaaaagaagcaagagggaaa 171  Q
    |||||||||||||||||||  |||| |||||||||||||||| |||||| |||||    
T  38989477 aaccagaaagattaagagactttaaagtgtgacatgaaaagaggcaagacggaaa 38989423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 38989571 - 38989526
Alignment:
Q  29 aaggcaatgtactttaaagacaagctggttaatgttggcaaattca 74  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||    
T  38989571 aaggcaaagtactttaaagacaagttggttaatgatggcaaattca 38989526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 361 - 528
Target Start/End: Complemental strand, 52186946 - 52186779
Alignment:
Q  361 cctaaagtatgaagaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttt 460  Q
    ||||||||||||||||| || ||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||     
T  52186946 cctaaagtatgaagaacttagtgtaagagtgggaagactcctccagagaatgatccatcttttggacaaaatgcaggtttgaacggcctgttttgcgttc 52186847  T
Q  461 aagaaggacactatgtgaatgagaatacaatcaatcaagttactgataatgtcttcatttttgttgtc 528  Q
    |  ||||| | || ||| | ||||| | ||||| |||||| |||||||||||||||||||||||||||    
T  52186846 agaaaggagagtaggtggaggagaacagaatcagtcaagtcactgataatgtcttcatttttgttgtc 52186779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 52187191 - 52187136
Alignment:
Q  117 aaccagaaagattaagagaagttaatgtgtgacatgaaaagaagcaagagggaaag 172  Q
    ||||||||||||||||||| ||||| ||| |||||||||||| |||||| ||||||    
T  52187191 aaccagaaagattaagagacgttaaagtgcgacatgaaaagatgcaagaaggaaag 52187136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 455
Target Start/End: Complemental strand, 35968376 - 35968336
Alignment:
Q  415 ccatcttttggacaaaatgcaagtttgaacggcctcttttg 455  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  35968376 ccatcttttggacaaaacgcaagtttgaacgacctgttttg 35968336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 379 - 485
Target Start/End: Complemental strand, 5418 - 5312
Alignment:
Q  379 taatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgtttaagaaggacactatgtga 478  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| || ||||||| |||||||    
T  5418 taatgtaagagtgggaagagtcttccagagattgatccatcttttggataaaatgcatgtttgaacggcctctcttgtgttcaaaaaggacagtatgtga 5319  T
Q  479 atgagaa 485  Q
    |||||||    
T  5318 atgagaa 5312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 358 - 492
Target Start/End: Complemental strand, 476161 - 476027
Alignment:
Q  358 ggtcctaaagtatgaagaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcg 457  Q
    ||||||||||| |||||||| || |||||| ||||||||| | ||||| |||||||||||||||||||| ||||| |||||||||||||| ||||| |||    
T  476161 ggtcctaaagtttgaagaacttagtgtaagggtgggaagagtattccagagattgatccatcttttggataaaatacaagtttgaacggcttctttggcg 476062  T
Q  458 tttaagaaggacactatgtgaatgagaatacaatc 492  Q
    ||||| ||||| | | |||||| ||||||||||||    
T  476061 tttaaaaaggagagtgtgtgaaggagaatacaatc 476027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 358 - 468
Target Start/End: Complemental strand, 481073 - 480963
Alignment:
Q  358 ggtcctaaagtatgaagaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcg 457  Q
    ||||||||||| |||||||| ||| ||||| ||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||    
T  481073 ggtcctaaagtttgaagaacttaaggtaagcgtgggaagagtcttccagagattgatccatcttttggataaaatacaagtttgaacggcctctttggcg 480974  T
Q  458 tttaagaagga 468  Q
    ||||| |||||    
T  480973 tttaaaaagga 480963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 362 - 531
Target Start/End: Original strand, 778167 - 778336
Alignment:
Q  362 ctaaagtatgaagaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgttta 461  Q
    ||||||| |||||||| ||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| || |||||||| || || |    
T  778167 ctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttggactgcctctttggctttca 778266  T
Q  462 agaaggacactatgtgaatgagaatacaatcaatcaagttactgataatgtcttcatttttgttgtcctt 531  Q
    | || || | |||||||| ||||| |  |||  |||||| | ||||  ||| || |||||||||||||||    
T  778267 aaaaagatagtatgtgaaggagaacatcatctgtcaagtcattgattgtgtgtttatttttgttgtcctt 778336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 379 - 485
Target Start/End: Original strand, 1304694 - 1304800
Alignment:
Q  379 taatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgtttaagaaggacactatgtga 478  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || || || ||||| | |||||||    
T  1304694 taatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 1304793  T
Q  479 atgagaa 485  Q
     ||||||    
T  1304794 ttgagaa 1304800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 379 - 478
Target Start/End: Complemental strand, 1186332 - 1186233
Alignment:
Q  379 taatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgtttaagaaggacactatgtga 478  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || || || ||||| | |||||||    
T  1186332 taatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 1186233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 379 - 478
Target Start/End: Complemental strand, 1204396 - 1204297
Alignment:
Q  379 taatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggcctcttttgcgtttaagaaggacactatgtga 478  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || || || ||||| | |||||||    
T  1204396 taatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatgtga 1204297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 777834 - 777976
Alignment:
Q  29 aaggcaatgtactttaaagacaagctggttaatgttggcaaattcaannnnnnnggaaatatttgtatccgaccaaacaatatatcgtaaccagaaagat 128  Q
    |||||||  ||||| | ||||||||| ||||||| ||| ||||||||       ||||||||  || |  ||||||||||||||| | ||||||||||||    
T  777834 aaggcaaaatacttcagagacaagcttgttaatgctggtaaattcaaaaaatttggaaatatgagtttgtgaccaaacaatatatggaaaccagaaagat 777933  T
Q  129 taagagaagttaatgtgtgacatgaaaagaagcaagagggaaa 171  Q
    ||||||| ||||| || ||||||||||||||||| || |||||    
T  777934 taagagacgttaaagtttgacatgaaaagaagcatgatggaaa 777976  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 5361015 - 5361077
Alignment:
Q  379 taatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttg 441  Q
    ||||| |||||| |||||| ||||||| |||||| ||||||||||||| ||||||||||||||    
T  5361015 taatgcaagagttggaagagtcttccagagattggtccatcttttggataaaatgcaagtttg 5361077  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 363 - 444
Target Start/End: Original strand, 13490896 - 13490977
Alignment:
Q  363 taaagtatgaagaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 444  Q
    |||||||||||| |  ||||||||| ||||||||| ||||||| | |||  ||||||||||||| |||||  ||||||||||    
T  13490896 taaagtatgaagcaattaatgtaagggtgggaagattcttccatacattcttccatcttttggataaaattaaagtttgaac 13490977  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 7126036 - 7125963
Alignment:
Q  370 tgaagaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaa 443  Q
    |||||||  ||||||||| || |||||||  ||||| |||||  |||||||||||||||| || ||||||||||    
T  7126036 tgaagaaattaatgtaagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaa 7125963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 1186596 - 1186544
Alignment:
Q  118 accagaaagattaagagaagttaatgtgtgacatgaaaagaagcaagagggaa 170  Q
    ||||| |||||||||||| ||||| |||||| |||||||||| || |||||||    
T  1186596 accagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaa 1186544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 1204660 - 1204608
Alignment:
Q  118 accagaaagattaagagaagttaatgtgtgacatgaaaagaagcaagagggaa 170  Q
    ||||| |||||||||||| ||||| |||||| |||||||||| || |||||||    
T  1204660 accagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaa 1204608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 1304430 - 1304482
Alignment:
Q  118 accagaaagattaagagaagttaatgtgtgacatgaaaagaagcaagagggaa 170  Q
    ||||| |||||||||||| ||||| |||||| |||||||||| || |||||||    
T  1304430 accagtaagattaagagacgttaaagtgtgagatgaaaagaaacaggagggaa 1304482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 7033557 - 7033517
Alignment:
Q  122 gaaagattaagagaagttaatgtgtgacatgaaaagaagca 162  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  7033557 gaaagtttaagagaagttaaagtgttacatgaaaagaagca 7033517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 25601803 - 25601743
Alignment:
Q  384 taagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 444  Q
    |||| ||||||| ||  ||||||||||   |||||||| ||||||||||||||||||||||    
T  25601803 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 25601743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 33958061 - 33958133
Alignment:
Q  379 taatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggcctct 451  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  33958061 taatgtaagagtgtgaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaacggcctct 33958133  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 6844223 - 6844163
Alignment:
Q  384 taagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 444  Q
    ||||||||||||||   |||||||||||| ||||||||||||| | |||||||||||||||    
T  6844223 taagagtgggaagatgtttccaaagattgttccatcttttggatagaatgcaagtttgaac 6844163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 392 - 447
Target Start/End: Complemental strand, 32413712 - 32413657
Alignment:
Q  392 ggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggc 447  Q
    ||||||| |||||| |||||  |||||||| |||||||||||||||||||||||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggc 32413657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 9235846 - 9235889
Alignment:
Q  401 ttccaaagattgatccatcttttggacaaaatgcaagtttgaac 444  Q
    |||||||||||| ||||||||||||| | |||||||||||||||    
T  9235846 ttccaaagattgttccatcttttggagagaatgcaagtttgaac 9235889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 6889256 - 6889182
Alignment:
Q  370 tgaagaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 444  Q
    |||||||| |||| |||| || ||||||   ||||| |||||| ||||||||||||| | |||||||||||||||    
T  6889256 tgaagaacttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaac 6889182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 7115536 - 7115588
Alignment:
Q  392 ggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 444  Q
    ||||||| |||||| |||||  ||||||||||||||||||  |||||||||||    
T  7115536 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaac 7115588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 7120608 - 7120660
Alignment:
Q  392 ggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 444  Q
    ||||||| |||||| |||||  ||||||||||||||||||  |||||||||||    
T  7120608 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaac 7120660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 7124012 - 7124064
Alignment:
Q  392 ggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 444  Q
    ||||||| |||||| |||||  ||||||||||||||||||  |||||||||||    
T  7124012 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaac 7124064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 7140726 - 7140778
Alignment:
Q  392 ggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 444  Q
    ||||||| |||||| | |||  ||||||||||||||||||| |||||||||||    
T  7140726 ggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 7140778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 7175105 - 7175145
Alignment:
Q  121 agaaagattaagagaagttaatgtgtgacatgaaaagaagc 161  Q
    |||||| |||||||| ||||| |||||||||||||||||||    
T  7175105 agaaaggttaagagatgttaaagtgtgacatgaaaagaagc 7175145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 8680340 - 8680392
Alignment:
Q  392 ggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaac 444  Q
    ||||||| |||||| | |||  ||||||||||||||||||| |||||||||||    
T  8680340 ggaagacacttccatatattcttccatcttttggacaaaatacaagtttgaac 8680392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 446
Target Start/End: Original strand, 42602903 - 42602935
Alignment:
Q  414 tccatcttttggacaaaatgcaagtttgaacgg 446  Q
    |||||||||||||||| ||||||||||||||||    
T  42602903 tccatcttttggacaagatgcaagtttgaacgg 42602935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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