View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14917_low_6 (Length: 596)
Name: NF14917_low_6
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14917_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 14 - 580
Target Start/End: Original strand, 1021974 - 1022522
Alignment:
| Q |
14 |
agagatgaagttatcgccggtttgaagtcatcggaaaaatcaccggagtttgttgccggcgttgaggatcctgtgagaaaagacgaggaggtgaatgtgg |
113 |
Q |
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| T |
1021974 |
agagatgaagttatcgccggtttgaagtcatcggaaaaatcaccggagtttgttgccggcgttgaggttccggtgagaaaagacgaggaggtgaatgtgg |
1022073 |
T |
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| Q |
114 |
aaaaggtgaagatgaagcataaggatttgaaagagattgttgaagtgataagagataattttgagaaagcggcggtggccggagatcggttatcggagat |
213 |
Q |
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| T |
1022074 |
aaaaggtgaagatgaagcataaggatttgaaagagattgttgaagtgataagagataattttgagaaagcggcggtggccggagatcggttatcggagat |
1022173 |
T |
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| Q |
214 |
gttgcagattagtagggctcaacttgatcggagtttcagtcaattgaagagtaagacttttattttgaaagtgtttgcttactgagaaagtgcgggaaaa |
313 |
Q |
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| T |
1022174 |
tttgcagattagtagggctcaacttgatcggagtttcagtcaattgaagagtaagacttttattttgaaagtgtttgcttactgagaaagtgcgggaaaa |
1022273 |
T |
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| Q |
314 |
ttttataattcatttcatttaatccnnnnnnnttatttgtctttattatctcaatttaaatttaaatgtgattaagcttaatttacatttatatatatat |
413 |
Q |
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| T |
1022274 |
ttttataattcatttcatttaatccaaaaaaattatttgtctttattatctcaatttaaatttaaacgtgattaagcttaatttacatt------tatat |
1022367 |
T |
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| Q |
414 |
ctgaagaaattggatttaatattttttgttatggaaaatattaaattatatacttaattgaaaaatggttattttgaattaaatgcagaaatagtttatc |
513 |
Q |
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| T |
1022368 |
ctgaagaatttggattta------------atggaaaatattaaattatatacttaattgaaaaatggttattttgaattaaatgcagaaatagtttatc |
1022455 |
T |
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| Q |
514 |
actctagtaatatactgagcaaagtgagctcaacttggacctctaagccaccattagcagttaaata |
580 |
Q |
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| T |
1022456 |
actctagtaatatactgagcaaagtgagctcaacttggacctctaagccaccattagcagttaaata |
1022522 |
T |
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