View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14917_low_9 (Length: 487)

Name: NF14917_low_9
Description: NF14917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14917_low_9
NF14917_low_9
[»] chr6 (3 HSPs)
chr6 (181-345)||(1132453-1132614)
chr6 (11-153)||(1132229-1132372)
chr6 (354-403)||(5832465-5832514)
[»] scaffold0212 (1 HSPs)
scaffold0212 (38-137)||(1078-1177)
[»] chr1 (4 HSPs)
chr1 (350-401)||(43901333-43901385)
chr1 (350-392)||(20158975-20159017)
chr1 (356-405)||(19426317-19426366)
chr1 (354-390)||(43192965-43193001)
[»] chr5 (1 HSPs)
chr5 (352-403)||(16435758-16435809)
[»] chr7 (1 HSPs)
chr7 (350-384)||(36374153-36374187)
[»] chr3 (1 HSPs)
chr3 (350-403)||(7670495-7670549)
[»] scaffold0009 (1 HSPs)
scaffold0009 (133-161)||(54324-54352)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 181 - 345
Target Start/End: Original strand, 1132453 - 1132614
Alignment:
Q  181 acaacaaggatgatgatgacgacaacgatgacaaaaaatattttaaaataagattgttactaaatataatgatcaattgagtgagcaaaaagacaaacac 280  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||    
T  1132453 acaacaaggatgatgatgac---aacgatgacaaacaatattttaaaataagatcgttactaaagatactgatcaattgagtgagcaaaaagacaaacac 1132549  T
Q  281 gacacattgatattcaagagacatcaaatagttattattaatgttagtattatcattatttatag 345  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1132550 cacacattgatattcaagagacatcaaatagttattattaatgttagtattatcattatttatag 1132614  T

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Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 1132229 - 1132372
Alignment:
Q  11 aatgaattaacaaatatgaagcaagatgagcggaacttccaaatgaagcttctc-tcgaggtgcttttccaacccctctcttatgcattcgggggtgccc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1132229 aatgaattaacaaatatgaagcaagatgagcggaacttccaaatgaagcttctcctcgaggtgcttttccaacccctctcttatgcattcgggggtgccc 1132328  T
Q  110 tccttagagttggctcatgtctgctatcaggccttttgtcctcg 153  Q
    ||||| |||||||||||| |||||||| |||| |||||||||||    
T  1132329 tcctttgagttggctcatatctgctataaggctttttgtcctcg 1132372  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 5832514 - 5832465
Alignment:
Q  354 tgttttacccctataatataggttattttcgggtttatctctgtaaaata 403  Q
    |||||||||||  ||||||||||||||| ||| ||| |||||||||||||    
T  5832514 tgttttacccccgtaatataggttatttccggttttttctctgtaaaata 5832465  T

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Target: scaffold0212 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0212
Description:

Target: scaffold0212; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 1177 - 1078
Alignment:
Q  38 gagcggaacttccaaatgaagcttctctcgaggtgcttttccaacccctctcttatgcattcgggggtgccctccttagagttggctcatgtctgctatc 137  Q
    |||||||||||| || ||||||||||| || ||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  1177 gagcggaacttctaactgaagcttctcacggggtccttttccaacccctctcttatgcgttcgggggtgccctcctttgagttggctcatgtctgctatc 1078  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 401
Target Start/End: Complemental strand, 43901385 - 43901333
Alignment:
Q  350 atagtgttttacccctataatataggttattttcgggtttat-ctctgtaaaa 401  Q
    |||||||||||||| | |||||||||| |||||||||||||| ||||||||||    
T  43901385 atagtgttttacccttgtaatataggtcattttcgggtttatactctgtaaaa 43901333  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 392
Target Start/End: Complemental strand, 20159017 - 20158975
Alignment:
Q  350 atagtgttttacccctataatataggttattttcgggtttatc 392  Q
    |||||||||||||||| |||||||||| |||||||| ||||||    
T  20159017 atagtgttttacccctgtaatataggtcattttcggttttatc 20158975  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 19426317 - 19426366
Alignment:
Q  356 ttttacccctataatataggttattttcgggtttatctctgtaaaataat 405  Q
    |||||||||||||||||| |||||||||  |||| | |||||||||||||    
T  19426317 ttttacccctataatataagttattttcaagtttttttctgtaaaataat 19426366  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 43192965 - 43193001
Alignment:
Q  354 tgttttacccctataatataggttattttcgggttta 390  Q
    ||||||||| || ||||||||||||||||||||||||    
T  43192965 tgttttacctctgtaatataggttattttcgggttta 43193001  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 16435758 - 16435809
Alignment:
Q  352 agtgttttacccctataatataggttattttcgggtttatctctgtaaaata 403  Q
    |||||||||||||| |||||||||| |||||| | ||| |||||||||||||    
T  16435758 agtgttttacccctgtaatataggtcattttcagttttctctctgtaaaata 16435809  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Original strand, 36374153 - 36374187
Alignment:
Q  350 atagtgttttacccctataatataggttattttcg 384  Q
    ||||||||||||||||||||||||||| |||||||    
T  36374153 atagtgttttacccctataatataggtcattttcg 36374187  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 7670495 - 7670549
Alignment:
Q  350 atagtgttttacccctataatataggttattttcgggtttatct-ctgtaaaata 403  Q
    |||||||||||| ||||||||||| ||||||||||| |||| || ||||||||||    
T  7670495 atagtgttttactcctataatatatgttattttcggttttacctcctgtaaaata 7670549  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 161
Target Start/End: Complemental strand, 54352 - 54324
Alignment:
Q  133 ctatcaggccttttgtcctcgtaagcaac 161  Q
    |||||||||||||||||||||||||||||    
T  54352 ctatcaggccttttgtcctcgtaagcaac 54324  T

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