View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14918_high_1 (Length: 545)
Name: NF14918_high_1
Description: NF14918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14918_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 15 - 527
Target Start/End: Complemental strand, 40619452 - 40618938
Alignment:
| Q |
15 |
cataggatgagaaaagtaatagtcaaaataatattaccaaatttgtacaaaaaa-gtaactagtccagttcaacgttgttgtaaaatgacgattgtaatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40619452 |
cataggatgagaaaagtaatagtcaaaataatattataaaatttgtacaaaaaaagtaactagtccagttcaacgttgttgtaaaatgacgattgtaatt |
40619353 |
T |
|
| Q |
114 |
tgtnnnnnnnnnnnnnnnnn-gattctcattaacctttaaatttaatttaggtatacatcatctgaattattaaagatgtaaaagttattagttagacaa |
212 |
Q |
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| T |
40619352 |
tgtaaccaaaaaaaaaaaaacgattctcattaacctttaaatttaatttaggtatacatcatctgaattattaaagatgtaaaagttattagttagacaa |
40619253 |
T |
|
| Q |
213 |
tacttactacgactaaaatattatgacccttgatggttaacaaaaataaatgtgtaaaaattagctacatacatattagttagattaattagaatttcat |
312 |
Q |
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| T |
40619252 |
tacttactacgactaaaatattatggcccttgatggttaacaaaaataaatgtgtaaaaattagctacatacatattagttagattaattagaatttcat |
40619153 |
T |
|
| Q |
313 |
gtgttttattttttattactaaaattagtatgtctaattgactatataaaatttactgcactatttgatgaaatacgtnnnnnnntaatattgtctacca |
412 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40619152 |
gtgttttattttttgttactaaaattagtatgtctaattgactatataaaatttactgcactatttgatgaaatacgtaaaaaaataatattgtctacca |
40619053 |
T |
|
| Q |
413 |
tttacaattatcattgacagtgtttgattttatctataactatttctaaaatcgcacttttaagaggtcgtgatttgtcgatcgtgtaaaacgcattata |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40619052 |
tttacaattatcattgacagtgtttgattttatctataattatttctaaaatcgcacttttaagaggtcgtgatttgtcgatcgtgtaaaacgcattata |
40618953 |
T |
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| Q |
513 |
taatggtgtaaaatt |
527 |
Q |
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| T |
40618952 |
taatggtgtaaaatt |
40618938 |
T |
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