View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14918_high_4 (Length: 389)
Name: NF14918_high_4
Description: NF14918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14918_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 325
Target Start/End: Original strand, 52435654 - 52435976
Alignment:
| Q |
7 |
gaagaatctcagacataaatagaaagaacagctgtagaaagtgtacaaagcaattcaagaattgtgttggcatataccattacattatatgcagtgccat |
106 |
Q |
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| T |
52435654 |
gaagaatctcagacatatatagaaagaacagctgtagaaagtgtacaaagcaattcaagaattgtgttggcatataccattacattatatgcagtgccat |
52435753 |
T |
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| Q |
107 |
ggcccattgtctaatgccaatgtatttcatgagaaatcatgtgcgtagtgtggtccatactcttactctagc----taaatcccctattgtctatctgaa |
202 |
Q |
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| T |
52435754 |
ggcccattgtctaatgccaatgtatttcatgagaaatcatgtgcgtagtgtggtccttactcttactctagctaattaaatcccctattgtctatctgaa |
52435853 |
T |
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| Q |
203 |
aatattgtcctgtgatatagtagtatgtcgtaaatgtgaagtgtgaacatataacattctcattctgctttttgagttaaattgtttgatctgtttgagt |
302 |
Q |
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| T |
52435854 |
aatattgtcttgtgatatagtagtatgtcgtaaatgtgaagtgtgaacatataacattctcattctgctttttgagttaaattgtttgatctgtttgagt |
52435953 |
T |
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| Q |
303 |
tcaggtccacacggtgaaaatat |
325 |
Q |
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| T |
52435954 |
tcaggtccacacggtgaaaatat |
52435976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 52436029 - 52436097
Alignment:
| Q |
321 |
aatatgaaattatttcaagcaagaaaaattaaattaatggaaaacaaattattctagctcttaatggca |
389 |
Q |
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| T |
52436029 |
aatatgaaattatttcaagtaagaaaaattaaattaatggaaaacaaattattctagctcttaatggca |
52436097 |
T |
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