View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14918_low_10 (Length: 223)
Name: NF14918_low_10
Description: NF14918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14918_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 58 - 214
Target Start/End: Original strand, 2564783 - 2564939
Alignment:
| Q |
58 |
tacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctattgttggaggccctgattttaatgaccaatttaatgatgcaagat |
157 |
Q |
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| T |
2564783 |
tacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctatagttggaggccctgattttaatgaccaatttaatgatgcaagat |
2564882 |
T |
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| Q |
158 |
ctgattactctcattctgaacctactacttatataaatgctgctttcacaggttctg |
214 |
Q |
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| T |
2564883 |
ctgattactctcattctgaacctactacttatatgaatgctgctttcataggttctg |
2564939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 2574698 - 2574822
Alignment:
| Q |
79 |
tctaatccaaatcctaatattcatgtgggtgctattgttggaggccctgattttaatgaccaatttaatgatgcaagatctgattactctcattctgaac |
178 |
Q |
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| T |
2574698 |
tctaatccaaatcctaatattcatgtgggtgctattgttggaggaccaaattctaatgaccaatacaatgatgcaagatctgattactctcatgcagaac |
2574797 |
T |
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| Q |
179 |
ctactacttatataaatgctgcttt |
203 |
Q |
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| T |
2574798 |
ctaccacctatatgaatgctgcttt |
2574822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 2564676 - 2564623
Alignment:
| Q |
10 |
gacatcatcatgggattgttacctagtatgtagtccacctatgttatgtacaca |
63 |
Q |
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| T |
2564676 |
gacatcttcatgggattgttacctagtatgtagtccacctatgttatgtacaca |
2564623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 2574570 - 2574515
Alignment:
| Q |
10 |
gacatcatcatgggattgttacctagtatgtagtccacctatgt--tatgtacaca |
63 |
Q |
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| T |
2574570 |
gacatcttcatgggattgtttcctagtatgtagtccacctatgtaatatgtacaca |
2574515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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