View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14918_low_2 (Length: 519)
Name: NF14918_low_2
Description: NF14918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14918_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 1179911 - 1180262
Alignment:
| Q |
16 |
gatatgataacggagagtatcggtgtaagacgacgcagtttgcgtcatgtcgagagcgaagagtgaagaatcagtgggagcgaagaaagtgaaagagttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1179911 |
gatatgataacggagagtatcggtgtaagacgacgcagtttgcgtcatgtcgagagcgaagagtgaagaatcagtgggagcgaagaaagtgaaagagttt |
1180010 |
T |
|
| Q |
116 |
gtggcgtttgaatttggatcaagaagatcgattcgaagatcagaggtgaggattgcattgcagaagaggtggtaaccgcgtgatcggagagtgttgagca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180011 |
gtggcgtttgaatttggatcaagaagatcgattcgaagatcggaggtgaggattgcattgcagaagaggtggtaaccgcgtgatcggagagtgttgagca |
1180110 |
T |
|
| Q |
216 |
ttgaatcgaattctctgttggggattgaattcaccaccgtgacggcgttagcaac---aagaagaagcaccataagaggaaaaatcgaactcattttttc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180111 |
ttgaatcgaattctctgttggggattgaattcaccaccgtgacggcgttagcaacaagaagaagaagcaccataagaggaaaaatcgaactcattttttc |
1180210 |
T |
|
| Q |
313 |
aagatttcttcacgcacaagaaagatgaacaagattgaaactgttactgtta |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1180211 |
aagatttcttcacgcacaagaaagatgaacaagattgaaactgttactgtta |
1180262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 424 - 509
Target Start/End: Original strand, 1180322 - 1180407
Alignment:
| Q |
424 |
gttatatttattggaaatttcaacctttcttattgttgggcttgggctttcctttttgggttacttctatcttcacgggcttctgt |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1180322 |
gttatatttattggaaatttcaacctttcttattgttgggcttgggctttcctttttgggttacttctatcttcatgggcttctgt |
1180407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University