View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14918_low_3 (Length: 500)
Name: NF14918_low_3
Description: NF14918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14918_low_3 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 500
Target Start/End: Complemental strand, 2564676 - 2564197
Alignment:
| Q |
10 |
gacatcatcatgggattgttacctagtatgtagtccacctatgttatgtacacattcaatttttagttataataattatgaaccaaaataataaagaaat |
109 |
Q |
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| T |
2564676 |
gacatcttcatgggattgttacctagtatgtagtccacctatgttatgtacacattcaatttttagttataataattatgaaccaaaataataaagaaat |
2564577 |
T |
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| Q |
110 |
gggcttaatgtctta-gagtcataaattagtgtacaaaatacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatga |
208 |
Q |
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| T |
2564576 |
gggctaaatgtcttaagagtcataaattagtgtacaaaatacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatga |
2564477 |
T |
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| Q |
209 |
attccatcaatatgatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtataca |
308 |
Q |
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| T |
2564476 |
attccatcaatattatttttgtttaggattttggagaaaatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtataca |
2564377 |
T |
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| Q |
309 |
aaagtccacctgagttaataataaatcaaatgctaattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaata |
408 |
Q |
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| T |
2564376 |
aaagtccacctgagttaataa------------taattcagctcattccatcaataatgaattaatgttgattgaaataagattgacctataagtaaata |
2564289 |
T |
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| Q |
409 |
tataccaggagnnnnnnnaatctgtagagagtaacttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagt |
500 |
Q |
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| T |
2564288 |
tataccaggtgtttttttaatctgtagagagtaacttccttgcatcaaagcacatataaatgattcaccatcactatgaatctttgctaagt |
2564197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 147 - 334
Target Start/End: Complemental strand, 2574433 - 2574246
Alignment:
| Q |
147 |
atacctgtgattttgcaaaggctttaatttcagaggaggtgaaattggtagagccacaatgaattccatcaatatgatttttgtttaggattttggagaa |
246 |
Q |
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| T |
2574433 |
atacctgtaattttgcaaaggctctaatctcagagggtgaaaaatgggcagagccacagtgtattccatcaatatggtttttgtttaagattttggagaa |
2574334 |
T |
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| Q |
247 |
aatgaatagtaccatggttgaggtcgtggtgtattgcaaattattactatctctagtatacaaaagtccacctgagttaataataaat |
334 |
Q |
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| T |
2574333 |
aatgaatagtaccatggttgaggttgtggtatattgcaaattactgctatctctaatatacagaagcccacctgagttaacaataaat |
2574246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 2574570 - 2574502
Alignment:
| Q |
10 |
gacatcatcatgggattgttacctagtatgtagtccacctatgt--tatgtacacattcaatttttagt |
76 |
Q |
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| T |
2574570 |
gacatcttcatgggattgtttcctagtatgtagtccacctatgtaatatgtacacattcaacttttagt |
2574502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 498
Target Start/End: Complemental strand, 2574148 - 2574081
Alignment:
| Q |
431 |
tgtagagagtaacttcctggcatcaaagcacatataaatgattcaccatcactatgaatctttgctaa |
498 |
Q |
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| T |
2574148 |
tgtagagagctacttcctggcatcaatgcacatataaatgattcagcatcagtctgaaacttggctaa |
2574081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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