View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14918_low_5 (Length: 387)
Name: NF14918_low_5
Description: NF14918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14918_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 46 - 372
Target Start/End: Complemental strand, 42187912 - 42187582
Alignment:
| Q |
46 |
tactttaaaagtaacaagttttaattgcttacataatccatacgaactagagtccccaaaacactaactagatcaagtaatgtaacaaatacaaaatcaa |
145 |
Q |
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| T |
42187912 |
tactttaaaagtaacaagttttaattgcttacataatccatacgaactagagtccccaaaacactaactagatcaagtaatgtaacaaatacaaaattaa |
42187813 |
T |
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| Q |
146 |
cttgagtttgaattacaattagggtgtgaatggggcaaagaccactactgaattatgtccaccaaacccaaatgaatttgagatagctgcacaaagaaaa |
245 |
Q |
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| T |
42187812 |
cttgagtttgaattacaattagggtgtgaatggggcgaagacaactacagaattgtgtccaccaaacccaaatgaatttgagataactgcagaaagcaaa |
42187713 |
T |
|
| Q |
246 |
ctaaatattagaaacatacaa--cttttttccttttaaact-tttaccaatgttc-acgcaaggcaacctacataccaacattaacttcatgcttctttt |
341 |
Q |
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| T |
42187712 |
acaaagattagaaacgtacaatttttttttctttctaaactctttgtcaatattcaaaccaaggtaacctacataccaacattaacttcatgcttctttt |
42187613 |
T |
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| Q |
342 |
taaaattagggacagtgtcaattgtaacatc |
372 |
Q |
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| T |
42187612 |
taaaattagggacagtgtcaattgtaacatc |
42187582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 130 - 343
Target Start/End: Complemental strand, 42197752 - 42197536
Alignment:
| Q |
130 |
acaaatacaaaatcaacttgagtttgaattacaattagggtgtgaatggggcaaagaccactactgaattatgtccaccaaacccaaatgaatttgagat |
229 |
Q |
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| T |
42197752 |
acaaatacaaaatcaacttgaacttgaactccacttagggcgtgaatggggcgaagacaactacagaattgtgtccaccaaacccaaatgaatttgagat |
42197653 |
T |
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| Q |
230 |
agctgcacaaagaaaactaaatattagaaacatacaacttttttccttt-taaact-tttaccaatgttc-acgcaaggcaacctacataccaacattaa |
326 |
Q |
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| T |
42197652 |
aactgcagaaagcaaaacaaagattagaaacgtacaattttttttctttctaaactctttgtcaatattcaaaccaaggtaacctacataccaacattaa |
42197553 |
T |
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| Q |
327 |
cttcatgcttcttttta |
343 |
Q |
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| T |
42197552 |
cttcatgcttcttttta |
42197536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 42204630 - 42204566
Alignment:
| Q |
172 |
tgaatggggcaaagaccactactgaattatgtccaccaaacccaaatgaatttgagatagctgca |
236 |
Q |
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| T |
42204630 |
tgaatggggcaaagactacgactgaattgtgtccaccgaacccaaatgagttggagatagctgca |
42204566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 42204490 - 42204429
Alignment:
| Q |
311 |
tacataccaacattaacttcatgcttctttttaaaattagggacagtgtcaattgtaacatc |
372 |
Q |
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| T |
42204490 |
tacacaccaacattaacttcatgtttcttcttaacattggggacggtatcaattgtaacatc |
42204429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 42197343 - 42197306
Alignment:
| Q |
335 |
ttctttttaaaattagggacagtgtcaattgtaacatc |
372 |
Q |
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| T |
42197343 |
ttctttttaacattagggactgtgtcaattgtaacatc |
42197306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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