View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14918_low_7 (Length: 325)

Name: NF14918_low_7
Description: NF14918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14918_low_7
NF14918_low_7
[»] chr6 (32 HSPs)
chr6 (5-309)||(4574236-4574540)
chr6 (5-306)||(4560437-4560738)
chr6 (37-291)||(4579378-4579632)
chr6 (1-240)||(4585633-4585872)
chr6 (11-237)||(4480693-4480919)
chr6 (5-231)||(4469809-4470035)
chr6 (18-291)||(4598117-4598390)
chr6 (5-237)||(4461123-4461355)
chr6 (1-240)||(4592228-4592467)
chr6 (59-246)||(4613672-4613859)
chr6 (5-239)||(4570970-4571204)
chr6 (1-240)||(4563708-4563947)
chr6 (5-255)||(4557107-4557357)
chr6 (1-237)||(4516321-4516557)
chr6 (1-234)||(4267062-4267295)
chr6 (1-237)||(4515017-4515253)
chr6 (65-231)||(4504357-4504523)
chr6 (11-234)||(3171744-3171967)
chr6 (1-237)||(4601789-4602025)
chr6 (1-242)||(4617017-4617258)
chr6 (11-231)||(4490261-4490481)
chr6 (1-237)||(4505857-4506093)
chr6 (1-156)||(4256508-4256663)
chr6 (1-237)||(4492955-4493191)
chr6 (33-218)||(4568072-4568260)
chr6 (1-234)||(4622145-4622378)
chr6 (1-234)||(4625954-4626187)
chr6 (1-116)||(4457715-4457830)
chr6 (1-163)||(4260050-4260212)
chr6 (30-137)||(4299671-4299778)
chr6 (155-255)||(4606941-4607041)
chr6 (131-233)||(4392052-4392154)
[»] scaffold0288 (1 HSPs)
scaffold0288 (1-234)||(3615-3848)
[»] chr5 (2 HSPs)
chr5 (1-234)||(24103002-24103235)
chr5 (1-237)||(27999995-28000231)
[»] chr8 (3 HSPs)
chr8 (1-237)||(1674226-1674462)
chr8 (59-253)||(20863797-20863991)
chr8 (18-255)||(16686180-16686417)
[»] chr7 (1 HSPs)
chr7 (1-231)||(3086426-3086656)
[»] scaffold0477 (1 HSPs)
scaffold0477 (89-234)||(4670-4815)
[»] chr3 (1 HSPs)
chr3 (1-237)||(1281114-1281350)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 309
Target Start/End: Complemental strand, 4574540 - 4574236
Alignment:
Q  5 caaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggt 104  Q
    ||||||| |||  ||||||||| | |||||||||||||   ||||||||||   |||| ||||| || ||||||||||| || |||||||||||||||      
T  4574540 caaactgcagatatatttgcaatgaatgggagattggaaaggaaatcgatactaatgtaaagagggaggaggtggagaaactggtcaatgaattgatgtc 4574441  T
Q  105 gggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggag 204  Q
     ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  4574440 cggagataaaggaaagaagatgaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggag 4574341  T
Q  205 aaagcgattaaggaggtgttgcttaaacaaaatcaagcttaagtcacttttatacaatatatatagttttgttaggaacaaataattcatattttaggtc 304  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4574340 aaagtgattaaggaggtgttgcttaaacaaaatcaagcttaagtcacttttatacaatatatatagttttgttaggaacaaataattcatattttaggtc 4574241  T
Q  305 ttcct 309  Q
    |||||    
T  4574240 ttcct 4574236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 4560738 - 4560437
Alignment:
Q  5 caaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggt 104  Q
    ||||||| |||  ||||||||| | |||| ||||||||   ||||| |||| | |||| ||||| || || |||||||| || |||||||||||||||      
T  4560738 caaactgaagatatatttgcaatgaatggaagattggaaacgaaattgatacaaatgtaaagagggaggacgtggagaaactggtcaatgaattgatgtc 4560639  T
Q  105 gggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggag 204  Q
      |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  4560638 ctgagataaaggaaagaagatgaggcaaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggag 4560539  T
Q  205 aaagcgattaaggaggtgttgcttaaacaaaatcaagcttaagtcacttttatacaatatatatagttttgttaggaacaaataattcatattttaggtc 304  Q
    |||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  4560538 aaagtgattaaggaggtgttgcttaaacaaaatcaaacataagttacttttatacaatatatatagttttgttaggaacaaatcatttgtattttaggtc 4560439  T
Q  305 tt 306  Q
    ||    
T  4560438 tt 4560437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 37 - 291
Target Start/End: Complemental strand, 4579632 - 4579378
Alignment:
Q  37 attggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaagg 136  Q
    |||||| |||||||||| |   ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  4579632 attggaattgaaatcgacactaatgtgaagagagaggaggtggagaagctggttaatgaattgatggtgggagagaaagcaaagaagatgaggcaaaagg 4579533  T
Q  137 ccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcgattaaggaggtgttgcttaaacaaaa 236  Q
    | |||||| |||||||||||| ||||| |||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| || ||||||||    
T  4579532 caattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaaaa 4579433  T
Q  237 tcaagcttaagtcacttttatacaatatatatagttttgttaggaacaaataatt 291  Q
    || | ||||||| |||||| ||| || | |||||||||||| ||| |||||||||    
T  4579432 tcgaacttaagtgacttttgtacgatttttatagttttgttcggaccaaataatt 4579378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4585872 - 4585633
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    |||||||||||||||||||||||||| | ||||||||||||  | ||| | || |   ||||||||||||| |||||||||||| | |||||||||||||    
T  4585872 ccaacaaactgtagaattatttgcaatgaatgggagattgggatggaagttgacaccaatgtgaagagagaggaggtggagaagttggtcaatgaattga 4585773  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    ||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||  |||||    
T  4585772 tggtgggagagaatggaaagaagatgaggcaaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacataaactt 4585673  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaatcaa 240  Q
    ||| |||| |||||||||||| ||||||||| ||||||||    
T  4585672 ggaaaaagtgattaaggaggttttgcttaaataaaatcaa 4585633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 4480919 - 4480693
Alignment:
Q  11 gtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggaga 110  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||   ||||||||||||| || ||||||| | || ||||||||||| ||||||||||    
T  4480919 gtagaattatttgcaatgaatgggagattggactcgaaatcgataccaatgtgaagagagaagatgtggagaggttaatcaatgaattgttggtgggaga 4480820  T
Q  111 gaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcg 210  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||| ||| |||| |||||| |||||||| ||||||||||||| ||||||||| |||| |    
T  4480819 gaaaggaaagaagatgaagcaaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtg 4480720  T
Q  211 attaaggaggtgttgcttaaacaaaat 237  Q
    ||||||||||| |||||||||||||||    
T  4480719 attaaggaggtcttgcttaaacaaaat 4480693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 4470035 - 4469809
Alignment:
Q  5 caaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggt 104  Q
    |||| |||||| |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4470035 caaattgtagatttatttgcaatgaatgggagattggacttgaaatcgataaagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggt 4469936  T
Q  105 gggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggag 204  Q
     |||||||| ||||||||||||||| |||||  ||| ||| | |||||||||| ||||| ||| || ||||||||||||  |||||||| |||||||||     
T  4469935 tggagagaatggaaagaagatgagggaaaagatcatggagttcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggac 4469836  T
Q  205 aaagcgattaaggaggtgttgcttaaa 231  Q
    ||||  |||||||| || |||||||||    
T  4469835 aaagtcattaaggatgtcttgcttaaa 4469809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 4598390 - 4598117
Alignment:
Q  18 tatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaagga 117  Q
    ||||||||| | ||||||||||||| |  |||| || |   ||||||||||||| |||||||||||||| ||||| |||||||||  |||||| ||||||    
T  4598390 tatttgcaatgaatgggagattggaatcaaaattgaaactaatgtgaagagagaggaggtggagaagctggtcaacgaattgatgtcgggagataaagga 4598291  T
Q  118 aagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcgattaagg 217  Q
    ||||| |||||||||||| | |||||  |||||| ||||||||||| ||| ||||||| ||||||||||||||||| |||||| ||||||| ||||||||    
T  4598290 aagaaaatgaggcaaaagacaattgatttgaagatgaaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaagg 4598191  T
Q  218 aggtgttgcttaaacaaaatcaagcttaagtcacttttatacaatatatatagttttgttaggaacaaataatt 291  Q
    ||||||| |||||||| |||||| ||||| | ||||| ||| ||||| ||||||||| |||||| |||||||||    
T  4598190 aggtgtttcttaaacagaatcaaacttaattaactttaataaaatatttatagttttattaggatcaaataatt 4598117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 4461355 - 4461123
Alignment:
Q  5 caaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggt 104  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| | ||||| |||||||||||    
T  4461355 caaactgtagatttatttgcaacaaatgggagattggacttgaaatcgataaagatgtgaagagggatgaggtggagaagttggtcaacgaattgatggt 4461256  T
Q  105 gggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggag 204  Q
     |||||||  |||||||||||||||||||||| ||| ||  | |||||||||| ||||| ||| || ||||||||||||  |||||||| |||||||||     
T  4461255 tggagagattggaaagaagatgaggcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaacttggac 4461156  T
Q  205 aaagcgattaaggaggtgttgcttaaacaaaat 237  Q
    ||||  |||||||| || |||||||||||||||    
T  4461155 aaagtcattaaggatgtcttgcttaaacaaaat 4461123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4592467 - 4592228
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| |||||| ||| | ||||||||||||  | ||||| ||||   |||| |||||||| ||||||||||| ||  ||||||||||||    
T  4592467 ccaacaaactgtagacttatttacaatgaatgggagattgggatggaaattgatacgaatgtaaagagagaggaggtggagaaacttatcaatgaattga 4592368  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    ||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||||| |||| | ||||||||||||||||||||||||| | ||||||    
T  4592367 tggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaactt 4592268  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaatcaa 240  Q
    ||| |||  ||| |||||||||||||||||| ||||||||    
T  4592267 ggacaaattgatcaaggaggtgttgcttaaataaaatcaa 4592228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 59 - 246
Target Start/End: Original strand, 4613672 - 4613859
Alignment:
Q  59 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggc 158  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  4613672 atgtgaagagagatgaggtagagaagctggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggc 4613771  T
Q  159 ggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcgattaaggaggtgttgcttaaacaaaatcaagcttaa 246  Q
     |||| |||||||||||| |||||||||||||| | ||||||||| |||| ||| || |||||| |||| |||||||||||| |||||    
T  4613772 agaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaaaatcaaacttaa 4613859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 4571204 - 4570970
Alignment:
Q  5 caaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggt 104  Q
    |||||||||||  ||| |||||  |||||||||||||| | ||||||||||   ||||||||||| |||||||||||||  | |||||||||||||||||    
T  4571204 caaactgtagatatatctgcaatacatgggagattggaatcgaaatcgatactaatgtgaagagaaatgaggtggagaatttggtcaatgaattgatggt 4571105  T
Q  105 gggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggag 204  Q
    |||||| |||||||||||||||||| ||||    || ||| |||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||     
T  4571104 gggagataaaggaaagaagatgaggaaaaatataatggagatgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaa 4571005  T
Q  205 aaagcgattaaggaggtgttgcttaaacaaaatca 239  Q
    |||| |||||||||||| ||||||||| |||||||    
T  4571004 aaagtgattaaggaggttttgcttaaataaaatca 4570970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4563947 - 4563708
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| |||||| ||| | ||||||||||||  | ||||||||||   |||| |||||||| ||||||||||| || |||||||||||||    
T  4563947 ccaacaaactgtagacttatttacaatgaatgggagattgggatggaaatcgatacgaatgtaaagagagaagaggtggagaaacttgtcaatgaattga 4563848  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    ||   ||||||||||||||||||||| |||||||||| |||||| |||||||||| | |||||   |||||||| |||||||||||||||||| ||||||    
T  4563847 tgtcaggagagaaaggaaagaagatgcggcaaaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttgttcatacatgaactt 4563748  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaatcaa 240  Q
    ||| |||| ||| |||||||| ||||||||||||||||||    
T  4563747 ggacaaagtgatcaaggaggttttgcttaaacaaaatcaa 4563708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 4557357 - 4557107
Alignment:
Q  5 caaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggt 104  Q
    ||||||| |||  |||||||||  |||||||||||||  | ||||| || |   ||||||||||||||||||| |||||  | ||||||||||||||||     
T  4557357 caaactgcagatatatttgcaatacatgggagattggcatggaaattgacaccaatgtgaagagagatgaggtagagaatttggtcaatgaattgatgga 4557258  T
Q  105 gggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggag 204  Q
    ||| |||||||||||||||||| || |||||   |||||| |||||| ||||||||||| ||||||||||||||| ||||||||||||| ||| |||||     
T  4557257 gggggagaaaggaaagaagatgtggaaaaagataattgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaatttggaa 4557158  T
Q  205 aaagcgattaaggaggtgttgcttaaacaaaatcaagcttaagtcactttt 255  Q
    |||| |||||||||||| |||||||||||||||||| | ||||| ||||||    
T  4557157 aaagtgattaaggaggttttgcttaaacaaaatcaaacctaagtgactttt 4557107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4516557 - 4516321
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    |||||||| || |||  ||||||||| | |||||||||||||   ||||| ||||   ||||||||||||| ||||||||||||||  |||||||||| |    
T  4516557 ccaacaaattgcagatatatttgcaatgaatgggagattggagcagaaattgataccaatgtgaagagagaggaggtggagaagctgatcaatgaattaa 4516458  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    |||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||| |||| |||||| ||||| || |||||||||||   ||||||    
T  4516457 tggtgggagataaaggaaagaagatgaggcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaactt 4516358  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaat 237  Q
    ||| |||| ||||||||||||| |||| |||||||||    
T  4516357 ggaaaaagtgattaaggaggtgctgctcaaacaaaat 4516321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 4267062 - 4267295
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| |||||||| | | ||||||||||||||| |||||| ||| | |||||||||||||||| || |||||| |||||||||||||||    
T  4267062 ccaacaaactgtagatttatttgctatgaatgggagattggactcgaaatcaatacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattga 4267161  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    ||||||||||||||||||| | ||||| |||||| | | | ||| |||||| |||||| || | | |||| |||||||| |||| |||||||| ||||||    
T  4267162 tggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaggaaggcagaagagaacacaagacctggtggtttttcatacatgaactt 4267261  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaa 234  Q
    ||| ||||  |||||||||||  |||||||||||    
T  4267262 ggacaaagttattaaggaggtcatgcttaaacaa 4267295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 4515017 - 4515253
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| |||||||||| | ||||||||||||  | ||||||||||   ||||||||||||| ||||| || ||||| |||||||||||||    
T  4515017 ccaacaaactgtagatttatttgcaatgaatgggagattgggatcgaaatcgatatgaatgtgaagagagaggaggttgaaaagcttgtcaatgaattga 4515116  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    ||||||||||||||||||| || |||||| ||||||  || ||| |||| |||||||| || | |||||| |||| ||| || | |||||||  ||||||    
T  4515117 tggtgggagagaaaggaaataaaatgaggaaaaaggttatggagttgaaaaagaaggcagacgaggacactagacttggcgggtcttcatacttgaactt 4515216  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaat 237  Q
    ||| |||| ||| ||||||||||||||||||||||||    
T  4515217 ggacaaagtgatcaaggaggtgttgcttaaacaaaat 4515253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 65 - 231
Target Start/End: Original strand, 4504357 - 4504523
Alignment:
Q  65 agagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggt 164  Q
    ||||||| ||||| ||||| ||  | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||     
T  4504357 agagagaagaggtagagaaacttattaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagagga 4504456  T
Q  165 ggacacgagacctggaggttgttcatacacgaacttggagaaagcgattaaggaggtgttgcttaaa 231  Q
    |||||| |||| ||| ||||||||||||| ||||||||| |||| ||||||||| || |||||||||    
T  4504457 ggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgcttaaa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 3171967 - 3171744
Alignment:
Q  11 gtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggaga 110  Q
    |||||||||||||| | | |||| |||||||  | ||||| ||||   |||| |||||||  ||||| ||||| ||  |||| |||||||||||||||||    
T  3171967 gtagaattatttgccaagaatggaagattgggatggaaattgataccaatgtaaagagaggggaggtagagaaactgatcaacgaattgatggtgggaga 3171868  T
Q  111 gaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcg 210  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||| |||| ||| || |||  ||| ||||||||||||| ||||||||| |||| |    
T  3171867 gaaaggaaagaagatgaggcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttcatacatgaacttggataaagtg 3171768  T
Q  211 attaaggaggtgttgcttaaacaa 234  Q
    ||||||||||| ||||||||||||    
T  3171767 attaaggaggtcttgcttaaacaa 3171744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4602025 - 4601789
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| ||||||| || | ||||||||||||  | |||||||||| | ||||||||||||| ||| ||| ||||||  |||||||| |||    
T  4602025 ccaacaaactgtagatttatttgtaatgaatgggagattggtatggaaatcgatacaaatgtgaagagagaggagttggcgaagctgatcaatgaagtga 4601926  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    | |  ||||| ||||| ||||||||||||||||||||||| ||| ||||||||| |||  ||| |  ||| ||||  || ||||||||||||| |||| |    
T  4601925 tagccggagataaaggcaagaagatgaggcaaaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggttgttcatacaagaacct 4601826  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaat 237  Q
    ||| ||||  |||||||||||||||||||||||||||    
T  4601825 ggacaaagttattaaggaggtgttgcttaaacaaaat 4601789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4617258 - 4617017
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    |||||| |||||||| ||||||| || | ||||||||||||  | ||||||||||   ||||||||||||| ||| |||  |||||  |||||||| |||    
T  4617258 ccaacagactgtagatttatttgtaatgaatgggagattggtatggaaatcgatacgaatgtgaagagagaggagttggcaaagctgatcaatgaagtga 4617159  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    | |  ||||| ||||||||||| |||| |||||||||||| ||| ||||||||||||| |||| | |||| ||||| || ||||||||||||| ||||||    
T  4617158 tagccggagataaaggaaagaaaatgaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaactt 4617059  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaatcaagc 242  Q
    | | ||||  |||||||| |||||||||||||||||| ||||    
T  4617058 gaacaaagttattaaggatgtgttgcttaaacaaaattaagc 4617017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 4490261 - 4490481
Alignment:
Q  11 gtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggaga 110  Q
    |||||||||||||| | | ||||||||||||  |  |||| ||||   |||| |||||||| ||||| ||||| ||  ||||||||||||||||||||||    
T  4490261 gtagaattatttgcgaagaatgggagattgggatgaaaattgataccaatgtaaagagagaagaggtagagaaactgatcaatgaattgatggtgggaga 4490360  T
Q  111 gaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcg 210  Q
    ||||||||||||||||||||||||||| |  ||| ||||||||||||| | || |||||||||||  || ||| ||||||||| ||||||||| |||| |    
T  4490361 gaaaggaaagaagatgaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtg 4490460  T
Q  211 attaaggaggtgttgcttaaa 231  Q
    |||||||| ||  ||||||||    
T  4490461 attaaggatgtcatgcttaaa 4490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4506093 - 4505857
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| |||||||||| | || |||||||||| | ||||| ||||   ||||||| |||||  | || |||||||| ||| ||||| | |    
T  4506093 ccaacaaactgtagatttatttgcaatgaattggagattggaatcgaaattgatactaatgtgaatagagaaaatgtagagaagctggtcgatgaaatta 4505994  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    |||| |||||||||||||| ||||||||| |||||| ||| ||| |||| |||| |||  ||| ||| || |||||||| |||||||||| || ||||||    
T  4505993 tggttggagagaaaggaaacaagatgaggaaaaaggtcatggagttgaaaaagagggcaaaggaggatacaagacctggtggttgttcattcatgaactt 4505894  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaat 237  Q
    ||| ||||  |||||||||||||||||||||||||||    
T  4505893 ggacaaagttattaaggaggtgttgcttaaacaaaat 4505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 4256508 - 4256663
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| ||||||| | || ||||||||||||| |||||||| |||   ||||||||||||||||||||||||| ||  ||||||||||||    
T  4256508 ccaacaaactgtagatttatttgtagcgaatgggagattggaattgaaatcaatactaatgtgaagagagatgaggtggagaatctgatcaatgaattga 4256607  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaag 156  Q
    ||  |||||| ||||||||||||||||||||||||| ||| ||  |||||||||||    
T  4256608 tgtcgggagaaaaaggaaagaagatgaggcaaaaggtcatggaattgaagaagaag 4256663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4493191 - 4492955
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| | |||||||| | || |||||||||| | |||||||||||  |||| || |||||  | |||||||| || ||||||||  | |    
T  4493191 ccaacaaactgtagattgatttgcaatgaattggagattggagtagaaatcgataggaatgttaatagagaaaatgtggagaatctggtcaatgagatta 4493092  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    |||| |||||||||||||| |||||||||  ||| ||||  ||| |||| |||||||| |||| ||||||   |||||| ||||||||||||| ||||||    
T  4493091 tggttggagagaaaggaaacaagatgaggagaaaagccacggagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaactt 4492992  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaat 237  Q
    ||| |||| ||| ||||| || |||||||||||||||    
T  4492991 ggacaaagtgatcaaggatgtcttgcttaaacaaaat 4492955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 4568260 - 4568072
Alignment:
Q  33 ggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaa 132  Q
    |||||| ||| | ||||| |||| | ||||||||||||| ||||||||||||||  | |||||||| ||||||||| |||||||||| ||||||||||||    
T  4568260 ggagatcggaatcgaaattgatacaaatgtgaagagagaggaggtggagaagctgatgaatgaattaatggtgggacagaaaggaaaaaagatgaggcaa 4568161  T
Q  133 aaggccattgagctgaagaa---gaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcgattaagga 218  Q
    |||||| | ||| |||||||   |||||| |||  |||||| |||||||| | || |||||||| ||||||||| |||| |||||||||    
T  4568160 aaggccgtggagttgaagaagaagaaggcagagaaggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga 4568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4622378 - 4622145
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    |||||||||||||||  ||| |||||  |||||||||||||| | |||||| |||   ||||||| ||||| ||||||  ||| ||  ||||||||||||    
T  4622378 ccaacaaactgtagatatatctgcaattcatgggagattggaatcgaaatcaatactaatgtgaaaagagaggaggtgtcgaatctgatcaatgaattga 4622279  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    ||  |||||| ||||||||||||||||| ||||||||||| ||| ||||| ||||||| || | |   || || ||||| |||||||||||||  |||||    
T  4622278 tgtcgggagataaaggaaagaagatgagacaaaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttcatacaacaactt 4622179  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaa 234  Q
    ||| ||||  |||||||||||  |||||||||||    
T  4622178 ggacaaagttattaaggaggtcatgcttaaacaa 4622145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4626187 - 4625954
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    |||||||| ||||||  ||||||||| | ||||||||||||| | |||||||||    |||||||||| || | ||| ||||| ||  |||||| |||||    
T  4626187 ccaacaaattgtagatatatttgcaatgaatgggagattggaatggaaatcgatgctaatgtgaagagggagggggtagagaaactgatcaatgcattga 4626088  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    |||  ||||| || |||||||||||||||||||||||||| ||| ||||||||||||| |||| | |||  || || || ||||||||||||| |||  |    
T  4626087 tggcaggagataacggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatat 4625988  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaa 234  Q
    ||| |||  |||||| || || ||||||||||||    
T  4625987 ggataaactgattaatgatgtcttgcttaaacaa 4625954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 4457830 - 4457715
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    |||||||  |||||| |||||||||| | ||| ||||||||  | |||||||||| | |||||||||||||||||||||||||| |||||||||||||||    
T  4457830 ccaacaagttgtagatttatttgcaatgaatgagagattgggatggaaatcgatacaaatgtgaagagagatgaggtggagaagttagtcaatgaattga 4457731  T
Q  101 tggtgggagagaaagg 116  Q
    |||||||||| |||||    
T  4457730 tggtgggagaaaaagg 4457715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 4260050 - 4260212
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| ||||||| |||| ||||||||||||| |||||||  |||   ||||||| ||||||||||||| ||||||  |||||||| | |    
T  4260050 ccaacaaactgtagatttatttgtaacgaatgggagattggaattgaaattaatactaatgtgaaaagagatgaggtggcgaagctgatcaatgaaatta 4260149  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggagg 163  Q
    ||   |||||  |||||||||||||||||||||||| ||| ||| |||||| |||||| ||||    
T  4260150 tgtcaggagaagaaggaaagaagatgaggcaaaaggtcatggagttgaagaggaaggcagagg 4260212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 4299671 - 4299778
Alignment:
Q  30 atgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgagg 129  Q
    ||||||||||||| | |||||||||| | |||||| |||||| |||||||| |||||  ||||||||||||||||||||||||||||| | ||||||||     
T  4299671 atgggagattggaatcgaaatcgatacaaatgtgaggagagaggaggtggaaaagctgatcaatgaattgatggtgggagagaaaggagataagatgaga 4299770  T
Q  130 caaaaggc 137  Q
    ||||||||    
T  4299771 caaaaggc 4299778  T

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Target: chr6; HSP #31
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 4606941 - 4607041
Alignment:
Q  155 aggcggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcgattaaggaggtgttgcttaaacaaaatcaagcttaagtcacttt 254  Q
    ||||||||| ||||| |||||| || |||| |||||||| ||||||||| |||| ||||||| |||| |||||||||||||||||| | ||||| |||||    
T  4606941 aggcggagggggacaagagaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaacctaagtgacttt 4607040  T
Q  255 t 255  Q
    |    
T  4607041 t 4607041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 4392052 - 4392154
Alignment:
Q  131 aaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcgattaaggaggtgttgcttaa 230  Q
    ||||||| || ||| |||||||||||||  ||| ||||||  ||||||| |||| ||||| || ||||||||| |||  |||||||||||| ||||||||    
T  4392052 aaaaggcgatcgagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaa 4392151  T
Q  231 aca 233  Q
    |||    
T  4392152 aca 4392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 3615 - 3848
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  3615 ccaacaaactgtagatttatttgcaacgaatgggagattggacttgaaatcgatatggatgtgaagagagatgaggtggagaagctagtcaatgaattga 3714  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
     ||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||| |||| | |||| ||||| || ||| ||||||||| |||| |    
T  3715 cggtgggagagaaaggaaagaagatgaggcaaaaggccgtggagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacct 3814  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaa 234  Q
    ||| ||||  ||||||||||| ||||||||||||    
T  3815 ggacaaagttattaaggaggttttgcttaaacaa 3848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 24103235 - 24103002
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| |||||||| | | ||||||||||||||| |||||||||| | |||||||||||||||| || |||||| |||||||||||||||    
T  24103235 ccaacaaactgtagatttatttgctatgaatgggagattggactcgaaatcgatacaaatgtgaagagagatgacgtcgagaagttagtcaatgaattga 24103136  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    ||||||||||||| ||||||| ||||| |||||||| | | ||| | ||||||||||| || | | |||| ||| |||| |||| |||||||| ||||||    
T  24103135 tggtgggagagaacggaaagacgatgaagcaaaaggtcttggagttcaagaagaaggcagaagagaacacaagatctggtggtttttcatacatgaactt 24103036  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaa 234  Q
    ||| ||||  |||||||||||  |||||||||||    
T  24103035 ggacaaagttattaaggaggtcatgcttaaacaa 24103002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27999995 - 28000231
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| ||||||| || | |||| |||||||  | ||||| ||||   ||||||||| ||| ||  ||||||||||  ||||||||||||    
T  27999995 ccaacaaactgtagatttatttgtaatgaatggaagattggtatggaaattgatatgaatgtgaagatagaggatttggagaagcttatcaatgaattga 28000094  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||| ||||||| ||||| |||| | |||| ||||| || ||||||||||||| ||||||    
T  28000095 tggtgggagagaatggaaaaaagatgaggcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttcatacatgaactt 28000194  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaat 237  Q
    ||| |||| ||||||||| |||||| |||||||||||    
T  28000195 ggacaaagtgattaaggaagtgttgtttaaacaaaat 28000231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 1674462 - 1674226
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    ||||||||||||||| ||||||| || | |||| |||||||  | ||||| ||||   ||||||||||||| |   ||||||||||  ||||||||||||    
T  1674462 ccaacaaactgtagatttatttgtaatgaatggaagattggtatggaaattgatacgaatgtgaagagagagggtttggagaagcttatcaatgaattga 1674363  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||  ||||||||||||| |||| | |||| ||||| || ||||||||||||| ||||||    
T  1674362 tggtgggagagaatggaaaaaagatgaggcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaactt 1674263  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaat 237  Q
    ||| |||| ||||||||| ||||||||||||||||||    
T  1674262 ggacaaagtgattaaggaagtgttgcttaaacaaaat 1674226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 59 - 253
Target Start/End: Original strand, 20863797 - 20863991
Alignment:
Q  59 atgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggc 158  Q
    |||| |||||||| |||||||||| ||| || |||||||||||||||||||||||||||| || ||||||||||||| | | |||| |||||||||||||    
T  20863797 atgtcaagagagaggaggtggagatgctggtaaatgaattgatggtgggagagaaaggaaggaggatgaggcaaaagacaaatgagttgaagaagaaggc 20863896  T
Q  159 ggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcgattaaggaggtgttgcttaaacaaaatcaagcttaagtcactt 253  Q
     |||| |||||| ||||| | |||| ||||||| | ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  20863897 agaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaatcaaacttaagtgactt 20863991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 16686180 - 16686417
Alignment:
Q  18 tatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattgatggtgggagagaaagga 117  Q
    ||||||||| | ||||||||||||  | ||||| || |   |||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  16686180 tatttgcaatgaatgggagattggcatggaaattgacaccaatgtgaagagagatgaggtggagaaattggtcaatgaattgatggtgggagagaaagga 16686279  T
Q  118 aagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaacttggagaaagcgattaagg 217  Q
    |||||||||||| |||||   ||||| ||| | | ||||| ||| |  ||| |||||||||| ||||||||||||| ||||||||| |||| ||||| ||    
T  16686280 aagaagatgaggaaaaagataattgaactgcaaatgaaggtggacgaagacccgagacctggtggttgttcatacatgaacttggaaaaagtgattatgg 16686379  T
Q  218 aggtgttgcttaaacaaaatcaagcttaagtcactttt 255  Q
    |||| |||||||||||||||||| | ||||| ||||||    
T  16686380 aggttttgcttaaacaaaatcaaacctaagtgactttt 16686417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3086656 - 3086426
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    |||| ||||||||||  ||| |||||   ||||||||||||| ||||||||||||   ||||||||||||| ||||| ||||||||  ||||||||||||    
T  3086656 ccaataaactgtagatatatctgcaatatatgggagattggaattgaaatcgatactaatgtgaagagagaggaggtcgagaagctgatcaatgaattga 3086557  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    |||||||||| ||||||||||||||||||||||| | |   ||| | |||||||| || || | | |||| ||    || ||||||||||||| ||||||    
T  3086556 tggtgggagataaaggaaagaagatgaggcaaaatgtcgcagagttaaagaagaaagcagaagagaacaccagtatcggtggttgttcatacatgaactt 3086457  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaa 231  Q
    ||| ||||  ||||||||||| |||||||||    
T  3086456 ggacaaagttattaaggaggtcttgcttaaa 3086426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 89 - 234
Target Start/End: Original strand, 4670 - 4815
Alignment:
Q  89 tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttc 188  Q
    ||||||||||||||  |||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||| |||| | |||| ||  |||| || |||||    
T  4670 tcaatgaattgatgtcgggagataaaggaatgaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttc 4769  T
Q  189 atacacgaacttggagaaagcgattaaggaggtgttgcttaaacaa 234  Q
    ||||| ||||||||| |||| ||||||||||||  |||||||||||    
T  4770 atacatgaacttggacaaagtgattaaggaggtcatgcttaaacaa 4815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 1281350 - 1281114
Alignment:
Q  1 ccaacaaactgtagaattatttgcaacgcatgggagattggacttgaaatcgatagagatgtgaagagagatgaggtggagaagctagtcaatgaattga 100  Q
    |||||| |||||||| ||||||| || | |||| |||||||  | |||||||||| | ||||||||||||| |||||||  ||| |  ||||||||||||    
T  1281350 ccaacagactgtagatttatttgtaatgaatggaagattggtatggaaatcgatacaaatgtgaagagagaggaggtggctaagttgatcaatgaattga 1281251  T
Q  101 tggtgggagagaaaggaaagaagatgaggcaaaaggccattgagctgaagaagaaggcggaggtggacacgagacctggaggttgttcatacacgaactt 200  Q
    | |  || ||  |||||||||| |||||  |||||||||| ||  ||||||||  |||||||| | |||| ||||| || ||||||||||||| ||||||    
T  1281250 tagccggggatgaaggaaagaatatgagagaaaaggccatggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaactt 1281151  T
Q  201 ggagaaagcgattaaggaggtgttgcttaaacaaaat 237  Q
     || |||| |||||||||  |||||||||||||||||    
T  1281150 cgacaaagtgattaaggaaatgttgcttaaacaaaat 1281114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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