View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14918_low_9 (Length: 256)
Name: NF14918_low_9
Description: NF14918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14918_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 2564693 - 2564939
Alignment:
| Q |
1 |
ggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaacttcaccagaccaaagtgggttgcaatgatggttacacagatt |
100 |
Q |
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| T |
2564693 |
ggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaagttcaccagaccaaagtgggttgcaatgatggttacacagatt |
2564792 |
T |
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| Q |
101 |
atttctattcctctaatccaaatcctaatattcatgtgggtgctattgttggaggccctgattttaatgaccaatttaatgatgcaagatctgattactc |
200 |
Q |
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| T |
2564793 |
atttctattcctctaatccaaatcctaatattcatgtgggtgctatagttggaggccctgattttaatgaccaatttaatgatgcaagatctgattactc |
2564892 |
T |
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| Q |
201 |
tcattctgaacctactacttatataaatgctgctttcacaggttctg |
247 |
Q |
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| T |
2564893 |
tcattctgaacctactacttatatgaatgctgctttcataggttctg |
2564939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 2574590 - 2574822
Alignment:
| Q |
4 |
agtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatcaaacttcaccagaccaaagtgggttgcaatgatggttacacagattatt |
103 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | | |||| |
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| T |
2574590 |
agtaaatatccaaaacaattacatcacagaggttcttccatcccttcaatcaaagttcaccagaccaaagtgggttgcaatgatggccaatcgaactatt |
2574689 |
T |
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| Q |
104 |
tctattcctctaatccaaatcctaatattcatgtgggtgctattgttggaggccctgattttaatgaccaatttaatgatgcaagatctgattactctca |
203 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
2574690 |
tctcatcatctaatccaaatcctaatattcatgtgggtgctattgttggaggaccaaattctaatgaccaatacaatgatgcaagatctgattactctca |
2574789 |
T |
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| Q |
204 |
ttctgaacctactacttatataaatgctgcttt |
236 |
Q |
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| T |
2574790 |
tgcagaacctaccacctatatgaatgctgcttt |
2574822 |
T |
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