View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_high_13 (Length: 392)
Name: NF14919_high_13
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 133 - 383
Target Start/End: Complemental strand, 1531780 - 1531536
Alignment:
| Q |
133 |
taattgttaacataaaaaatgaaagatagtagagaaatattgaaaggtaaaactcactgtatttannnnnnnnnnnnnnnggaaattagaaat----ata |
228 |
Q |
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| T |
1531780 |
taattgttaatatcaaagatgaaagatagtaaagaaatattgaaaggtaaaactcactgtatttgatataa----------gaaattagaaattaatata |
1531691 |
T |
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| Q |
229 |
aagacataatcctattactgctgccataaactagaaaactaaaacttgaatatcttcaaggtcttgaagaagcataacttgattggctaaaaaacttgtt |
328 |
Q |
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| T |
1531690 |
aagacataatcctattactgctgccataaactagaaaactaaaacttgaatatcttcaaggtcttgaagaagcataacttgattggctaaaaaacttgtt |
1531591 |
T |
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| Q |
329 |
tgccacaacattccttatatctttcatctgttgaaccaaatcatcccacctttgc |
383 |
Q |
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| T |
1531590 |
tgccacaacattccttatatctttcatctgttgaaccaaattctcccacctttgc |
1531536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 301 - 383
Target Start/End: Original strand, 23053606 - 23053686
Alignment:
| Q |
301 |
cataacttgattggctaaaaaacttgtttgccacaacattccttatatctttcatctgttgaaccaaatcatcccacctttgc |
383 |
Q |
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| T |
23053606 |
cataacttgattgactaaaa--cttgtttgccacaacattctttatatctttcatatgttgaaccaaatcattccacctttgc |
23053686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 1531877 - 1531818
Alignment:
| Q |
50 |
actaaatctaatcaagtttta--attaaacattttaaattaagtgaatccattagcactt |
107 |
Q |
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| T |
1531877 |
actaaatctaatcaagttttataattaaaaaatttaaattaagtgaatccgttagcactt |
1531818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 1533439 - 1533474
Alignment:
| Q |
61 |
tcaagttttaattaaacattttaaattaagtgaatc |
96 |
Q |
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| T |
1533439 |
tcaagttttaattgaacattttaaattaagtgaatc |
1533474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 23053466 - 23053498
Alignment:
| Q |
165 |
agaaatattgaaaggtaaaactcactgtattta |
197 |
Q |
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| T |
23053466 |
agaaatattgaaaggtaaaactcattgtattta |
23053498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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