View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14919_high_14 (Length: 388)
Name: NF14919_high_14
Description: NF14919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14919_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 54328483 - 54328125
Alignment:
| Q |
14 |
aagaaaatctatggatttaacatatggaacacttgattcatattggaaccaaatccaaagcttagacgaaaaagtgaacgagatttcagattgtaaagag |
113 |
Q |
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| T |
54328483 |
aagaaaatctatggatttaacatatggaacacttgattcatattggaaccaaatccaaagcttagacgaaaaagtgaacgagatttcggattgtaaagag |
54328384 |
T |
|
| Q |
114 |
tcgggagttgaaaaatgtgcaaacctgaggagcagaagagggagatcatgttcaatattttcacaagaaagcaataagatacctcttgataaatcatata |
213 |
Q |
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| T |
54328383 |
tcgggagttgaaaaatgtgcaaacctgaggagtagaagagggagatcatgttcaatattttcacaagaaagcaataagatacctcttgataaatcatata |
54328284 |
T |
|
| Q |
214 |
gattaccttatcctattaatgcagataaagaaaatcactttgaaaggggaatggatacaccacaagtttctagtccctcttgttcggttaatgtgcatga |
313 |
Q |
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| T |
54328283 |
gattaccttatcctattaatgcagataaagaaaatcactttgaaaggggaatggatacaccgcaagtttctagtccctcttgttcggttaatgtgcatga |
54328184 |
T |
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| Q |
314 |
tgtatttgaagttccacaaacaagtgaaaagcatgaagttagtgaacatgggaaaagaa |
372 |
Q |
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| T |
54328183 |
tgtatttgaagttccacaaacaagtgaaaagcatgaagttagtgaacatgggaaaagaa |
54328125 |
T |
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